Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000067 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000067 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	76024
Total Scaffold Genes	99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	64 (64.65%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

76024

Total Scaffold Genes

99 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

64 (64.65%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008244	Metagenome / Metatranscriptome	336	Y
F019833	Metagenome	227	Y
F024790	Metagenome / Metatranscriptome	204	Y
F026269	Metagenome	198	Y
F026563	Metagenome	197	Y
F029752	Metagenome	187	Y
F035769	Metagenome / Metatranscriptome	171	Y
F090371	Metagenome / Metatranscriptome	108	Y
F099305	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100006719	F024790	AGG	MINWFRQKLQNFLYPQYPQDSELVESKPHTRRGVLVRGSSFDSRGMSFTIHQASGGYVLEYSSYDEKTDRPNHNLHIIPSDQDMGQGIAHIITLEMLRK
Ga0209297_100006721	F026269	AGG	MRYLLITFMRKPGGQIDEQVAVSKKVKPSDLQTCNVILDYAKKKVDKCVIEGKVLDREWDKMHEYYLRIYPNLISQLEKEASITEKTNGA
Ga0209297_100006765	F019833	AGG	MYELRYLVQKGLDNPKKVLQYRTQIEFTDYSSKTDDGRYISIKKWAEWQNVPIIDETK
Ga0209297_100006776	F090371	GAGG	MSHQEFESNVSYLVRPLLNDNEHAGFFSDTGTLFAECSENTARSIFHRLSKEFGVGKVQINGPINGEYSYDFE
Ga0209297_100006780	F026563	AGCAG	LFTPDIDNKSKLCYTSIMNEKVELYCTQNDEGQWLVWFPHPLGGMDVLESFDNESDAKIFYQQQLNDADYT
Ga0209297_100006783	F029752	AGGAG	MNRDYNNLQYILNKTPDELHKWWNSLDDEDQSYAMEIIIEYRKMLDEPIVEDLSIARDILKQFML
Ga0209297_100006787	F099305	N/A	MIHIKRFVDKITLIEGKQGRDVVIPISEARGLRDELTKLLVDNYELLQNTNKVEPVFQVEMNGGRF
Ga0209297_100006793	F008244	AGGAG	MFNTATYAFIDGVSDFKKKFVEQTVQHEGIKTAMNSFVDAQAKYTKSAADAGMQSMMALGMIFTSKDFYTEMGDQFKTMVPAFNTKKAKK
Ga0209297_100006794	F035769	N/A	MKKILGMLLVFLGFSTDTYGTELEKYIVGRNPQDIGDIERLTYEFHRKQSNWRFL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000067

Overview

Ecosystem & Geography

Associated Families

Sequences