Scaffold Ga0209297_1000041

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000041
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105579
• Total Scaffold Genes: 175
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (70.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034813	Metagenome	173	Y
F061573	Metagenome	131	N
F062751	Metagenome	130	N
F063404	Metagenome	129	Y
F069775	Metagenome / Metatranscriptome	123	N
F082571	Metagenome / Metatranscriptome	113	Y
F086845	Metagenome / Metatranscriptome	110	Y
F088547	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_1000041112	F061573	GGA	MSGVYVMVTQDGYRVTASERFIYLFGSYNDDSMNYNIDSQVLSEMFGNCAILNSAKEALEAAKCISKTINETEDGIMFIDSYGKYTFEELMDGKANKELSNN
Ga0209297_1000041126	F069775	AGGA	MSYAKLSVEELQGYFSDFHKDYYGFRPRGFGTVEQWNDRDWLIANIEQIHGAIDAMKATFSGREELRQQGWVVEETDPELAKRAKWLADERKREQDDFLAQMDADWAEQMEKADIND
Ga0209297_1000041135	F062751	GAGG	MSRMKDLAIALDEYADYLKANYNQRGYSRPDRQLTVEFDMGSKFIKVIIGHTGDTSRSSHSFIVLGEYKTAKATFKHGDILKSASWRAPAKNFARGNIMENEYGSISWTGA
Ga0209297_1000041136	F063404	AGGA	MITLNRAELIELLSYKGFTTDYLMTKDDETLENLYIEYIVLAEDYV
Ga0209297_1000041168	F082571	GGAG	MIVAGWIVVGFFSAIGWWSANHYVIEPYFPEPIKKERKVETKND
Ga0209297_10000413	F086845	GGA	MPIEITNTLRGASLIRVEGIGTYYANLISLAVDSNEVVSAANIKRINWSTNGNIQIVRNGNNIATLHTVGEIKLDEWGQSIANNNTSNVVITVVTGGTLFLEVSKSATYTTPLTGM
Ga0209297_100004194	F034813	GGAG	MSFDFDVENVYMVEFQSGKTIYVSFYEVEDVLEYCEDEYPKEFIKTIYKEVYSNDGENE
Ga0209297_100004195	F088547	AGG	MINLEQFRKSGVCAIYHRVPIEFLDEFRSEMAKQGKFFKIRYRGPRFNVPSARYRSFMSKASTCLKQDAKAFSVYNY