NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209297_1000022

Scaffold Ga0209297_1000022


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)176829
Total Scaffold Genes215 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)150 (69.77%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041242Metagenome / Metatranscriptome160Y
F056435Metagenome / Metatranscriptome137Y
F071987Metagenome121N
F073105Metagenome / Metatranscriptome120Y
F096668Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_1000022106F056435GGAMKTLAFRILATFAASGLGVIGAGAIANIPLWKAVFMAGVAGVAQVVEGLSRAYLDDGKLSVGEINSVFNKVDRADSK
Ga0209297_100002211F041242N/AMTGNGGDQMTEPTKQWQDFLDPDAPLTEDAVWQAIADANDLDYSEIADGDLFEWL
Ga0209297_100002239F073105N/AMTTTINITWHQPDERSQGREDSAWYTHSADHHDIVASVSNGERTVYIYSDGEQRAHLAYDPTDWSKGHEVIRYCDQWGDIKNDNDIYEASESGRLDWINNSWFDLYAEEQGWSDCVQHTLTEAIASATELLADDEYWETV
Ga0209297_100002267F071987AGGAMTTTLLQRTKDAIADGKIIGDGHTIFNPDFYAPHFSEDELSKAKLIQTFKSDKSDHKSTIFGKDGKPMEKLKGVYNLTFLYWLCGALGINSHNDYNGRGSQADELARRIRKELA
Ga0209297_100002272F096668AGGAGMGLIAFHTPEDGFTLNGVEVEIIWDDTPEATEGVRIIVDENAVRVTDILSDPDHSEHDMWSAWDDDIFYYCESEQEWKELLVTGHHDGWRVLQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.