Scaffold Ga0209297_1000015

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000015
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 196540
• Total Scaffold Genes: 245
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 191 (77.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F007312	Metagenome / Metatranscriptome	353	Y
F009209	Metagenome / Metatranscriptome	321	Y
F021091	Metagenome / Metatranscriptome	220	Y
F097447	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_1000015106	F097447	GGAGG	MAIPGVTTLIRDRFYSVSRQDAPVGPRIVTIAKRSTADGTGGVPDLDVVRVSNEADAITAFGSGSDAHRSFLELVTAGAERIFIVPLPSDTVFNHTLCTVTSATFGGSVFDAAFVAAESAVPDMIIPWGRGSEANDWNANAATPSDDREYGFHADNNSAYATNWAYKVGVAVKTISENTNPCLGIMGVKPFLASTTLGGTATYERMTPSQTATKLSLTGLPDRDAGDAWKSVGPYISIVATEIKPVNYKSGTTDFGYSNGAAFLAASLSRLPSYSSVVNKPLYNVEALRYAPTRTQQQALSTKGVNTVVLNFNKVAVFGEGLTFGQTTSDYTRLSTKRIVDEASLVIRQVCQKFIGEPSNIQVRNAMETAITSGLRGMQLMGALLGSDFTVSYVPNQNKAIVDLILTPAFELKTIEVQVAINL
Ga0209297_1000015117	F001360	AGGAG	MSLAKFRKVHSKTGSGRFVVSEGIAPAAYLLPHPGLPTWYYDTEDNRFEIVIPKGTILSVVADSNGDARVVPANGTSSSKSWGDNMSNTAWDPTAGATPAYSSGATDTVTVPARSIPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVSGINNDVTVGSVVRSDVMGRPVLAAATDFFSGSSAYSYLQVGKVVEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTKAGPNNGKLGIRSNLDVTNVIGAFRVNLTL
Ga0209297_1000015135	F021091	N/A	MNDWKKFTDVNGDFQLANFLYKSINDLMKHSLDMGTLLSSDSHKLRAYKEQTKKLFKNKWFEIAQSLEFFDIIEKCICYNEVQETYCEVCKGARYKLSSYLNSDEIREIGIFFNAAQNADLAGKLQKGLMKALDELS
Ga0209297_1000015212	F009209	AGGA	MSDTFDNAEEFLSSLEGIKDPVKTDTKDYQQDLYKKWFRSKTQSGFLAIRPWNEALKMKIDIGKTSSEGKLQSSTAVFVDTIDFAAYLRSIANQTAVINYPANERMGVPTNEGFVSYGGTTIDGKPISRIFKAHYWQTSDAVDATSFVWKCGHFAARKSDSGAFIPDMKTPLSVDQIKVSRQDICSISYLMDLSMVSYVTNNQDWYEQ
Ga0209297_100001583	F007312	AGGAG	MATFYVGPRPVLKGRTTAGMVNPYTSMTGKAKGTGTYSFYPLYSTSHVLDGAPDNHNIPGTGNRPGNRFLSQVFNGTTLYIHPLAGLFQDGAHYEGSRFRPMEFKGLTGAKAFPSIFGHESGRVTTYSFYNNYIFDGVTSANIFSNTGHGQRTEAQGAPSSFGFFQPTEFHGVASVKAFPTTFGQANDPSDYGRKKVKQWFGVASAQAL