Scaffold Ga0209297_1000004

Overview

Basic Information

• Taxon OID: 3300027733
• Scaffold ID: Ga0209297_1000004
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 358344
• Total Scaffold Genes: 413
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 269 (65.13%)
• Novel Protein Genes: 31
• Novel Protein Genes with Ribosome Binding Sites (RBS): 18 (58.06%)
• Associated Families: 31

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F003750	Metagenome / Metatranscriptome	470	Y
F005589	Metagenome	395	Y
F007310	Metagenome	353	Y
F007752	Metagenome	345	Y
F008552	Metagenome	331	Y
F009266	Metagenome / Metatranscriptome	320	Y
F010398	Metagenome	304	Y
F010618	Metagenome	301	N
F012775	Metagenome	277	Y
F013084	Metagenome	274	Y
F016812	Metagenome	244	Y
F018175	Metagenome	236	Y
F018927	Metagenome	232	Y
F023349	Metagenome	210	N
F027516	Metagenome	194	Y
F027849	Metagenome	193	N
F029104	Metagenome	189	Y
F030427	Metagenome / Metatranscriptome	185	Y
F043402	Metagenome	156	Y
F043405	Metagenome / Metatranscriptome	156	N
F045090	Metagenome	153	N
F051920	Metagenome	143	N
F061849	Metagenome	131	Y
F064720	Metagenome / Metatranscriptome	128	Y
F067747	Metagenome / Metatranscriptome	125	N
F072286	Metagenome	121	N
F076074	Metagenome	118	N
F093841	Metagenome	106	Y
F103265	Metagenome	101	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_1000004132	F018175	N/A	MDNSPKNQKDYYHNKIREFEKRTGKSMNVKGVSKIYDCNIENCEYNTPAAMDMMQKHECYIYHGLLAEEDPRSNGTNWQMYGFAYVNGKTYKYYYETKQWGAEVKDFTHHQNKDKTWKAAKLDKTNFPYTLDLGEDYLPYAVENKHIGSSFDSFLKTNNIELKRDINWAVKMLEHGKMMSREGNPSLTLFPKKYDHAESTITTVDLFAEDWVVVQSKSFKDVLDDLNAGKTIRRKSWHPDWGVGKYSRYGKIIYLDLIADDWEVVDVVAEVNKIQEEHRKG
Ga0209297_1000004135	F012775	N/A	MKLFSEITRPLIALNLKVRYKRWPEAYYIYRDEEILMDSLGNLFYYSWEDFIKLHTHILDNAGPVWEIYEEVEFDNL
Ga0209297_1000004183	F007752	GGA	MQLWEVKGFESSAVKALLIGKTANGQDCIGCAWDANTLYVYAYEGIVDTFMYYMERFNSVGKAMAFTKLKDGMEEGLYFSPYASGRKLQNHNQLYVLRRYEMKSAMTAHIVVHQNVCFDTPENAIKNLISSGDLEAERSYFVDCMARRVV
Ga0209297_1000004185	F076074	AGG	MNDYNGWKNETTWTVNILFMETIEQLIKDGYELDEVATHIYRKLGADEMNWYGSQIFASAWKQIDWWTLVARAKENVEKDAVSIAE
Ga0209297_1000004187	F027516	GGAG	MTYSEYIAKCEVAKTAFQCNVTSSLIVDNATPEKRLEWIAEDLAKLNAELEVIGKAFDEQDEVGDPFVGLEAK
Ga0209297_1000004198	F003750	GGAGG	MTEEIINRTIQVFLYTGGIVAFWQITKHMPKALYTLLECITVMTCSVLLLTPFSMIIEYILGGNIDTTMMFVAGLATVSLLSTMWMVMVQSSRELQGKKQYKYVVL
Ga0209297_1000004208	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDVTGFDLKKSLCEQSVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQADNNGKIEVA
Ga0209297_1000004209	F013084	N/A	MGIFSILGLMEETKNTVLSRGHNVKNWLILGNDCYALECADCKKSVMIKENPLPNEIKVGGEAATVNCVKPVKEKKLRKK
Ga0209297_1000004210	F018927	GAGG	MNKHIEITRHLTVDGTSTYYVLEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAELDRNGVKHIIPVGNELLEVN
Ga0209297_1000004213	F010398	AGGAG	MEISIEGSFEVNYHLVIDEDVFNECCEEAGLDPANFKKFTKAQWDELNPHFVQAVIDNEADIDYNEIHEESTVYADTLTIDDSDQMTTVYYEENRKTGSVEIL
Ga0209297_1000004218	F008552	N/A	MSVMIISFEASASEDTTLFGYFSMEYDPEFFSDIKENLTDIPKNKPLAFKLDTDNVKLLQGAFHTIRRIICVPDIEQQKFTYVFKHNFKSGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDVRFIDTIQNQFIKHQENMVN
Ga0209297_1000004231	F023349	N/A	MKHVLYEVTDDFDIIIKLTFENYSYLNAFIEQHTKEKKYEPKFLVLEINDEGDIDFIRTYNGTKEVSKKLVVDYID
Ga0209297_1000004243	F072286	N/A	MSEENTPTLILDNDVPKGEKKFTYFITERHGYVQTTLPYLRKLKISKLISKFSRRDRNKVFIEEDGDLRLFLKRHRVDGINVILEEDFSLPQYRFDNMINHDDYSWTGEQFDGFKSDWTLSFQCIFSKTDSIKHVRDGIFETKDGKQIKIYPTVYVDGKPLKAHQAKKLGFEPIAIDTKDLEEYND
Ga0209297_1000004244	F009266	AGGA	MTNKERKILDKELQYLCDYQDRVKAIREYTGIHPHKTFLNEVETIESLYKSVLENRKQCKSTYFSVGTAGWFVVYLRDKKKYKEGEEFSIKIYHTFVWSDNLD
Ga0209297_1000004245	F002398	GGA	MIALISIFLLTALDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKNKFDFFAYLDTIGIEHSKVGSYYFFNRKPK
Ga0209297_1000004246	F093841	GGA	MRMPTLKIEKFIYMADGFYVYKMEEGYAVKDQFGYTLKTAKTVKTCENYVQLQLQTRRAAERYAIEKINQDKNQSRAV
Ga0209297_1000004249	F010618	GAGG	MTLRELILKLQELEKKYEQYSQDTEVVIAVHSKNEFNPEVSLDYIDEVVHPALDTFSGYICRIVLCGEIEGED
Ga0209297_1000004251	F105155	N/A	MCAMMMQNFLKTSAAKQLAAEIKYLEWDQVTFNFYHKSFKGYNFYKRNISLNYWQYTVVDDITSCTFMMYEKEAKRCLTG
Ga0209297_1000004255	F016812	AGGA	MSTLYPELIEEDDEATFSSNLFKLYKLDERCGKLEAPNFRVIYLKDKKTQIHISNHFNSPTCIISYYNIKDKSCIDARTISKRLYNKIHDHYFEIKKKIF
Ga0209297_1000004257	F043402	GAG	MKEKFLQLSDSLNEIESDNIITLLTNLLESWEDDKINLHTSIQDFELSTIYKVLNLFTDEREDSSASANS
Ga0209297_1000004273	F029104	N/A	MKSSLKDFLNKIKFDDPSEYDFDADSSIDTSIKETIKNINKSSWCWTLFSCEGHNHDDNSQSLPYFVFIVKKKCIPVLLGLLFNTLDPKIDEITPLPLCNTNGINVSWGFTDDKYAIISVHWAHNFLEDENQHKKLLSDFYDMSFKILEAKL
Ga0209297_1000004275	F005589	N/A	MAKYKHSFWRYVPSTEKYKSEFKFVESFETDSDTVPEFHDHYCIDHMINLETGQMRVKNHSAPEYCVSKYIGWSLELPPVEKANKQEIYVVIHKSSFSHKKIEFDEFLEPENDRYNQEEWDFLLSVIESRFTKQKEWAKVGIRTPSQYDDGTQVFKTESEFRAFSFGRRAYFLYHLVRNYNFTHLIRRLNIGYTQ
Ga0209297_1000004279	F030427	AGGA	MKNILLSLVALCVATSAFAADPIFGPAKPPVKEGTGTFHAKSYGVEVKSVNDVKFVGIYDNKNGNGAVQKTLQSFSFQGLKFYTTATLSTNKNVDKAYAGASAMVEFGPVAPGLSVAAGVTVRGVELQRGFNVNNSYYPTVAVAVDPMTLVRNVMSTPAKAEKTVRNFVKQVF
Ga0209297_1000004289	F045090	N/A	MNYDLCDLLNRKMENAFSYIANDLPRNSMLKNTNIIDEFFEYVSPDEYIETMESEDCEHECYGFWIYRNGKISNQIEDFDKSARKITRELANMSFSNSPALDIMYFSGCMKVFISKNKAIYVETCIRPTLDQMFAIKDLEAKFLVKSGKFLWRIIERKKKSLCHDGIGSNALHDFKWGKI
Ga0209297_1000004292	F061849	GGAG	MSVVNGLYNQILKSSVGFTVSGTSVYATIPWYPQSTIDELRITNVSGTAFTVSAFSILNTGAHYRNSTTDGKAHLIYRDGTDVNATAAESFIARWGFNPAIYHEQLYNRPFLNVAFTFTESRSNIALRISAIGKKALPLDYPRSDTQGIESIDDYRVLVGKAQTGTGGTAGTIYDVTGIAKGNGGENASQFNLNATTDYIYIGSRKKIDHWEFQVGTGLTAPANLLGQVWSGTAWSSFTVIDDTSTGNSDTMKFSGIVEGSGLGSSTWVPVKADFSANTLLPNDPLTVQQNRIIAGGYPIVVLPPNPERYWVRFNLSAVAADGLVTFNKILPVSETYETY
Ga0209297_1000004297	F064720	GGAGG	MEIRNLRIKLSKGQLFTVSAILLVLTSVSYQLYLLRKHNKKEEMGEAYFVYPEN
Ga0209297_1000004348	F051920	AGGA	MKFRILQAGNLNVAWLTIEEGNINIETGIRFMYCLYDYDMQPLERKNYQINGDDFANIGNSGKDTRIAILELLLVSLNAVIVKE
Ga0209297_1000004361	F103265	GAG	MPWTQTDTSFKKLSNKRVTTSVGKGLPEEKGASTLELYLPDIKTGLIPGTGYAGYGVSENLFYYGPTAAFGQTLAVDTSVPGNLTWFATSGWANTTAANDGT
Ga0209297_1000004365	F067747	AGGAG	MIEVISQVVISIILLLTSMRVVKLPPKPYHQDAKVSVSTSKDKLDKKEKISKFIKLVQPRYSQSYIKKITAAIIKYAAVFKVDPYVIASTAYVESEFKMTSRPCIGMMQLVRPSIRYYDPKRVYNPRTIEGNIAIGTKELSVHLRKHSRKGLPSRTAYRNMYRSYNGSYMKNRYSVKTMLVQTRLEHLSIDALKSKLGKGPIWK
Ga0209297_1000004392	F043405	N/A	MPINNDILGIYKQVYVLTSGTAISYIVESANRNVSIDAQPKVLIAGSPKTRIMDIGGVTETISITAPMLIGGGAAYDGRALVGNKITEILNPATATLPILKSASYSISEGGGSVSVTLESDGNAASGNSGFYLVNSTTPHPSLNPVGTGGSGTTAFGPTRVARFYDFRAKIGGRQYFIQEANVDVNVETSKAYFINPYDFTNPNDGYRYSGGGGTVIPSVLGGFGISWAYGSQFPHIGVNGITISGKGKGAVVVGSTYASETTAGITTQTAGKTILASTEDVTFALEIAGGTGGNPGVVATWQDLIAGIGLSKSIINATAFSVSTGILTVEFDFMCYVV
Ga0209297_100000466	F027849	N/A	MSEPEFIESEECKDIAEKLVSKYYPFIGYVNLDLVHFVEMDGYKGKNAPPYIMSGLTQSWARGILQSLGNGKIYCLGVWSDLWEELEQSKKEWIIFRCLYSISPSQDGKIRSFDVQDYGFITEYFVRAGIGPYWMLKDGLPSLLEGSHALPLILPMEDDD