Scaffold Ga0209442_1006815

Overview

Basic Information

• Taxon OID: 3300027732
• Scaffold ID: Ga0209442_1006815
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5696
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011276	Metagenome	292	Y
F017266	Metagenome	241	Y
F093145	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209442_100681510	F017266	AGGA	MVGTNTRPYAQTVIAHGRQMGKSQVNDLIRHFYANMMTQPKIKWQRLPGLKLQAYVDDIRPENRPGRGLRETDMDPVQAWTEECRCGTRLSFNVWLFKNEKQITMFLIRWAE
Ga0209442_100681520	F093145	AGGA	MDDDKIISFTHDIDTVIAKYQEDFSAAGISGILLSRVTLLMSHDTEVGKGLLKFV
Ga0209442_10068157	F011276	AGGA	MIKGLMGSKGLIVSGGDTSLPYISTNVNNPVQGMIRVNNTDLEVFNGTAWQSLPSSYATVSLDQDTQDLLQWARAQRTMAMNRLTLAQNNPALMKALEAVKRAEDNFELLSKFVEHDEPGVGSVLVGYNFNTP