Scaffold Ga0209442_1001699

Overview

Basic Information

• Taxon OID: 3300027732
• Scaffold ID: Ga0209442_1001699
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12294
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012111	Metagenome	283	N
F032582	Metagenome	179	N
F088747	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209442_10016991	F032582	N/A	MRVDFDNTPTFIVSKPESEKEKRCIRYMKSFEIDAVPMYGFRSHNCGISTDYYHNCEKEKAKVKTIVAGLSHFSVWSAIKWMVEAKVTNHRTFLIVEDDVEFIDKNWKAKANDNLEFLPNDWHVIYLGSCCADPIEDHAYIASNLYKLVRGMCTHAYLVNYEGACKLLETNQKVWCPIDIQIAIDSMPRMNFYGILPRLATQENTN
Ga0209442_100169912	F088747	AGGAGG	MAEGLLGGIIGSAGGILGGLLGAGKKPVIPAFKPIDFAAEQKQAIKQNLGSLSSASELARKTTTADQSVLEEQLRRAIPGYDQLIAQAGSNIGASLRGEISPEISSQVQRSTAGRALSGGFGGASGMGRSL
Ga0209442_10016999	F012111	N/A	MSERAPKRYTDGSVTFEGGVDSGVMPSEVDRNQVAFAVNASFRQGFASPRPGFIQKDMVICDSITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSDPLIFNGVGIRRANIDEIKCGRMMAYVNGRIWYALENGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDIWKNLSYPIQAISLLTNGALGSRSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFILARGSDQSIQFWEISKAEKEDNSVANGPSSIEWLVQTRAYNFEIPFGLKRLDSGDIFIDALDGTAAFNVQYRPDQYPGWLDWANWSECATTNQCSNLCPIANFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTITGFCRIKSVRVHAYDVQESAVGECRTSQGCKTLEACDVNPFTYTSE