Scaffold Ga0209442_1000620

Overview

Basic Information

• Taxon OID: 3300027732
• Scaffold ID: Ga0209442_1000620
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20680
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (86.49%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F042293	Metagenome / Metatranscriptome	158	N
F074881	Metagenome / Metatranscriptome	119	Y
F088893	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209442_100062020	F042293	GAG	VNAAITFEELKEALKRLDEVTLLELLGIQSDDLVERFDDMIEKKQEYLIKELD
Ga0209442_100062029	F074881	GAGG	MLYLSVEPNEAAFIVRVIGQLPTESGAFPLHQKLVAQFQEQEKQAVETVESN
Ga0209442_100062030	F088893	GGAG	VQTGVKHIEKNQILFNVEGETFKVKIGEDLDLEEVYTVLLSALVYLEDLASGNTAHPSSQELH
Ga0209442_100062035	F001143	GAGG	MSSILIAIIGVVYAIVAVDLLYKGNTGLGIAFIGYALGNVGLYMEAAK