NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247833_1037701

Scaffold Ga0247833_1037701


Overview

Basic Information
Taxon OID3300027730 Open in IMG/M
Scaffold IDGa0247833_1037701 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2886
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004838Metagenome / Metatranscriptome421Y
F015211Metagenome / Metatranscriptome256Y
F065363Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0247833_10377011F065363N/AQAIGAGFQALSTVARSAQISLARQRITELYNNNTFNVQNLNRLSPTQLSNAMTQIDEQIKMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFGNLPGWVLPAALGLGAFLLLKGRR
Ga0247833_10377014F004838N/AMITAQDKILHVANKLGLTSLKDMQASTGAVYDVDTDLSGQIFSNAARHQNPSITNINENQFEVNEALLVETIAFYCLSAGGDVTNFQQQYGSNAVILFDLVIGNKRVMKDTPVFAAGSPYCFANAGNKDRTIGEDVASTYIPRHQIFMEGAGILIPPQVQWYVQYTVFNIITGAVIAPIEAKQIGCYLFGTKVLLNFNTTI
Ga0247833_10377016F015211N/AMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIRLSATTSAAPQTIINAMQLVVTLTINNDVVVDSVTAHELGASVGSGITTGFPNFIPF

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