Scaffold Ga0247833_1034923

Overview

Basic Information

• Taxon OID: 3300027730
• Scaffold ID: Ga0247833_1034923
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3083
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F034566	Metagenome	174	Y
F054581	Metagenome	139	Y
F084246	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247833_10349233	F004475	AGG	MANWTEELTDDQKEQVWYFIVETVKEIREQIAQDIEGTSDLWKAKGFNKSRRTTKAFQISAAIARGQNEI
Ga0247833_10349235	F084246	AGG	MADKAEDTSCYTYKVEMIVQILAEDEPKAAEQLEKNGGYVTGRKVTLMDSVPLFNGVAKSKD
Ga0247833_10349237	F034566	AGGAG	MSFKLKSIIWVQSSLIVILLIALLFMGGDLKQSRKMTLDQSNYCIRYTSDIIASSRLDLIREQDAHQRDVDKANSMIADIINRYNTLVGRYNKSTGGINYDPLNQYSYKIMRTAP
Ga0247833_10349238	F054581	GAG	MCPHCNNPLIPILYGYSSPKYVDLHKEGLIFLVSKTYHTKKDPTSYCKKCEESFDIKL