NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247833_1021062

Scaffold Ga0247833_1021062


Overview

Basic Information
Taxon OID3300027730 Open in IMG/M
Scaffold IDGa0247833_1021062 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)4788
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044453Metagenome / Metatranscriptome154Y
F050331Metagenome / Metatranscriptome145N
F064669Metagenome / Metatranscriptome128N
F082597Metagenome / Metatranscriptome113N
F099193Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0247833_102106211F044453AGGMASMPMQNREQTSMIELKFLLKTESGEMLTRQQVIDRLCQYDVCMLMRNIHLEDYDWLSDIRERGFKGYRNYTDDELREEWLESEAGWSNMMADGEQPYDIHSTKEMI
Ga0247833_102106214F099193AGGAGMYIMMDQSRLKREFTEENLTAWAEYRAECHRANYYFKRDGWSEGTLFDWDPDKKECTLQLRWGDDQNNLEQYSHYEDLDEQEYHRQWDEWHMSVKLTDFVS
Ga0247833_102106215F064669AGAAGGMNYTRALHPVEQWVQHITRTTPDLILGTLQHADLNLAQQLATEMQQRGLTMQDIERLKNRKHPTA
Ga0247833_10210624F082597AGGAGMTLSTYWHDLIEFKTEYAPFEVKVDYTYEEEPLESLFPEESAEWYLETARKVERSDMPYVVARVTVSLDGVQLAHNTLGGLLYDSWEEFERSMTEDDHGVIAETVDDARDQWDKMQALMTQPKVVA
Ga0247833_10210628F050331AGGAMKLKNPKKQADREAAIEWLVDKDFDYITYSDGGGLELLRSILDSGFKGYGNYTDKELTDAIVERKEMERMYG

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