 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027730 Open in IMG/M |
| Scaffold ID | Ga0247833_1008139 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10755 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (90.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042295 | Metagenome | 158 | Y |
| F043830 | Metagenome | 155 | N |
| F054803 | Metagenome | 139 | Y |
| F073237 | Metagenome | 120 | Y |
| F082375 | Metagenome | 113 | N |
| F085338 | Metagenome | 111 | Y |
| F090290 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247833_100813911 | F073237 | GAGG | MNLQDVLWFDTSKGRIGILMVLDWHTESLHYFMGIADGMNEKVDINHIYSGGARIPDEIGMAFFFGSDK |
| Ga0247833_100813912 | F054803 | GAGG | MATNKEYEEWKKDPVLQQEYEKYLLEEATKTDPKLNQFINQFTSQFNEIFKEKS |
| Ga0247833_100813915 | F043830 | N/A | MNPYLDKDQIKEAFRKIYLEETYNFLEEDLQKLADGFIMAAMPAIVKTERDMCIKFVNSLNTNVARALGEYRENL |
| Ga0247833_100813916 | F082375 | GAG | MTPKQFINELFGEDWKPSQLPVFLDQIKVWAEDAQRYYVVRDFAKTQFNENPRDRKDCHEFDDLVDAKRFEQELDE |
| Ga0247833_10081393 | F085338 | GAGG | MTKHEAQKILDKIREGYGHAYTEACAIECLYLTGDLGTHEAVRSTGMDEQVREEGYRERLRWRAIMVARSKE |
| Ga0247833_10081394 | F042295 | AGGA | MSYASAKQRYAEKTTDTFDGSESHDCFANGCPMAGGISTGGKWVCAYHHQATADTWPRVTEALRDCESIRVAINEVMKIDMISWGAMVNGYPPKWQEFAALFDNEPDLQPNEHEKIRKTKYEYRLRNELAIRAGLAKRKA |
| Ga0247833_10081397 | F090290 | AGGAG | MNKQLPYTTKSGLQIGCNYTPPQRNHMSHDAELLQMALLNIEPEFSQRRIAGWIAYALFLIALYAVLIVWEV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |