Scaffold Ga0247833_1003915

Overview

Basic Information

• Taxon OID: 3300027730
• Scaffold ID: Ga0247833_1003915
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 19294
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025484	Metagenome / Metatranscriptome	201	Y
F030667	Metagenome / Metatranscriptome	184	Y
F035737	Metagenome / Metatranscriptome	171	Y
F075656	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247833_10039151	F025484	GAGG	MDNGDGMYTMELQAEQIAENSTRYNGSAPCPTCGIVINPVEFLSNRGHCLSCTMQ
Ga0247833_100391516	F035737	N/A	MYRWLEIITMIENKKFIINDQAWAHEIEKGVETYTDMLFEAIWEGGDDEITETISGEPFCGCSPCFWRETFFYIVPRLIDGYENGKVELED
Ga0247833_100391533	F030667	N/A	MTNKSLVPNSLDSNKLKDSESKGILMKEIRVPMREYQDDGDNLAGFGLVEPKDAPQPKLRKSDPKTRGRRAEHEWTPMDVAAEFSYRVGRKYPLLPGTVSVKQLSGALAKFRKQYDTNALIELELLKLFMADERNFQNIGDEAPMLYKMFLASFGKKMNQARENLGLNKINAPIDTTVKMGTLQASDGRTFQNSLSGRAQLARYEKRLKENANG
Ga0247833_10039155	F075656	N/A	MTHLVYLQSSPHLVEGQILMLSNEQFAELASIPGGGASRSFKTSETPKGPGVMVSIPGAEKITNAPYTAEQAKSFKEEHAAKAKDDDYQGAWNVKGKIFADISKKHTTLPSARKAGVENKQIAGYDLGGTDVKRPQGGNVYFGRKVPGVESNPEFVASAHRTAEYERMESKPKAQDFAEQSHISRGATRMNRLGNTVPVSINEVYSTIAKNRRNRGV