NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247833_1003862

Scaffold Ga0247833_1003862


Overview

Basic Information
Taxon OID3300027730 Open in IMG/M
Scaffold IDGa0247833_1003862 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)19498
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (91.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011483Metagenome290Y
F012661Metagenome278Y
F012869Metagenome / Metatranscriptome276Y
F012971Metagenome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0247833_100386215F012971AGGAGMIDMKHETWAALQDLTPDDVADAICDSKAILEAILCNAWADVADMVRNRVELKAERMAQVSNDLALTPWVDDEEELLLYRQYRIERLQADLEHHKGSITTINPYSSEARNEN
Ga0247833_100386226F012661GAGGMELKTKKRHNLAPPGKKGQVVFYSEEEKKALAHIGSGSAAEGTRIAVRWAHHFWSVGLRPDHDLNHVGICLFVDDALADDL
Ga0247833_100386227F012869AGGMIAIHTKFIPATNSKGSRIKAYTVGCGDIKGFQATISYPHEYSHEVCHFQAVKALVEKHKLDWDLTDMRFGDSADGKGYSFCFDNSKVGA
Ga0247833_10038624F011483GAGGMTYDLVTYLRLEIKEMHKILQETQIALAQANVRLDRRSTPLTDERVYTLYRRSLDWRQLARDIEAEHDIK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.