Basic Information | |
---|---|
Taxon OID | 3300027730 Open in IMG/M |
Scaffold ID | Ga0247833_1000276 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
---|---|
Scaffold Length (bps) | 92501 |
Total Scaffold Genes | 151 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 113 (74.83%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F034813 | Metagenome | 173 | Y |
F038106 | Metagenome | 166 | Y |
F046912 | Metagenome | 150 | Y |
F083691 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0247833_100027680 | F083691 | AGG | MSISAYKEITEWNEPDFVVPNHIYLFDGKSNILAYARESDGQVTVFKKPLPMDTRRRKFIKVKHKELDAIGATVVVQQPEALNVPHWQVVSDSGKTYTVTLESGKYQCNCIGYAYRGKCKHSEQIKNENSN |
Ga0247833_100027682 | F046912 | AGAAG | MLVEMKMNKNDYQIDWNKLAKYNIVVNTRPKDPLQDVMKNDELVSWMQEYPDAMDAINKIKAKK |
Ga0247833_100027683 | F034813 | GGA | MSYDSDVENIYMVEFESGRTIHTSFYEVQDVKEFCADEYPNETIKVIYQEVYVGGDEDE |
Ga0247833_100027686 | F038106 | GGAG | MKLNYSEKEAVMQAIFGNHKSPAGFRSTYKGVPIGNYEMVKQFIDFTKYFVMFRGPRRRGASSTRKCDAKAFDVYQRDARVVHEIRIELEAFQRGVKWANNRSH |
⦗Top⦘ |