NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209248_10000086

Scaffold Ga0209248_10000086


Overview

Basic Information
Taxon OID3300027729 Open in IMG/M
Scaffold IDGa0209248_10000086 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31108
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0209248_1000008637F006480GAGMQRALIAGATLLLCGAIAARSKTEPLVFVFLRVDRAHDVAILRPMIAPDIGAQLSSGMLQLKPGTVLQCDAVTREYHAIVEGQVSTVTDLMLNCGDQKFVVKSLAFVPQTQ
Ga0209248_1000008639F000739AGCAGMEKQLKRIEIWLRGILAAAISGGAGGVLTGFAAVGIDPQHFNLQSGAGATLRIAAAAALINSVIGVAAYLQKSPLPNE
Ga0209248_1000008640F000696GAGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRTLGNAGGGGFIQDDVLLVVTAVTETDPSLQVSITDATAPPNQLPTDLLVPIKLWERPNLSCDDFLEMVDLTQHGGLPSRVQDVTLSIWEWRADGIYFIGATQDTQIRLRYQKSFPDFSDGTSVVLIRNAQEAIAYSGAAMAALARGFARFGAGAGFVPVAVFGVR
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