Scaffold Ga0247836_1074301

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1074301
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1775
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F016962	Metagenome / Metatranscriptome	243	Y
F057139	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_10743012	F057139	AGGA	MNIVKLNRNYNGYHYFTHRVEFYGGLQVRIKQWIKVRNWLWTQFGPSAEQALARADNFDGTQPVWAWDSEKSAVYLKEEALVLFQLRKEFWENAENL
Ga0247836_10743013	F002052	AGGAG	MPRTFNFQFTVTCAGSGSADLARVEEMIDLSMQDLVFDDEFIAALDEKTSVTIQVAPQFGKPNG
Ga0247836_10743015	F016962	N/A	MDMTELIIVGLIGIFIGWRAASHVHLDGFRQLLKALKVTEQDLLRAMIRIQSREWQPDDVEGAKDSTIVDVKLEQVGTEIFAYRKSDNQFLGQGQDSQTLIERLNQNLTPCKVVVAQEDGADLLQKRNT