Scaffold Ga0247836_1037587

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1037587
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3028
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F022872	Metagenome	212	Y
F067260	Metagenome	126	N
F080944	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_10375872	F067260	GGA	MTHFDKVVDPDLKRCETPEQMLQVLMYHYELDCKLGTITSLAFRQGLKAAVNMINPKAKSTASALSH
Ga0247836_10375874	F022872	N/A	MSWQIPAQIEQDFISGKAQYRTFQTGVGGQSILPVPNNAYAVIFGYDFSPAGGGITDVYPVVTTPQFDTSTLRWFETQQISFYTGTDFYPFIHHVQLNKTATISATGSVQAYSDIDNTPISRQVYITSDKDITITVGLILQTPQASANAIPQTNRTPALLTYGGSGQPVATQTDFGPAATPIQFMQPSPKDYQDFGFGLLPNGASGQAFATPDGNNGLLDPSVYLTSLGAVFLNAAAPNYFLCLHYALYTESVPEQRG
Ga0247836_10375875	F000710	N/A	MTMATNMDISYRQGIRSKGFAITAATGITQQTLSLSGLAKSFEGILLSSAFTATPQTVINPKQLRITLTINNDVVIDDDVALHYATPATGGFAGGFPFFIPIPRRLTGQDTIQIRLMNTAASQNVDVVVWYRNEL
Ga0247836_10375876	F002287	N/A	MSQVGKLGYVDSKLGAPTSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESTVIKTIWLGQFSTAGALELFGDRVQQTLSIIVGNQTVVKNLPIQFNQGTNGQAFDRLHENAGSISDGFAAATALSQFIQPVEIRLLTDIVIPPQVAFEVRIESNAAVYGTGAVVCALSGYGKIFSAGSSF
Ga0247836_10375877	F080944	N/A	ANAAQTRVPVGEDTPTAYLPRHQVFMEGAGILIPPQVQWYVDYRIFDVVTGATIAATDNTAIGCYLFGTRVLLNFNTTI