NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1028360

Scaffold Ga0247836_1028360


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1028360 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)3797
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016365Metagenome / Metatranscriptome247Y
F060634Metagenome132N
F074452Metagenome / Metatranscriptome119N
F080943Metagenome / Metatranscriptome114N
F083781Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0247836_102836011F060634N/AMIDFIVGFFAVIVFFAFYLYIGYWFLDLKTLPAEHWVSRSANHVRSFFGDVWAPMRWKTRRLDIRLLLVIDNLVIRLTNIDFVLLSKRLWTGLILFILKLKRLFFERNEDKR
Ga0247836_10283602F016365AGAAGGMNDLIKITLATAAIVYGMTAPLPANEAVKETQDAINKWYETASASISQDFTSLGVTVSNMPEKISLGVSNFWDETKQYQKDSWNETLKFEQEKQNWATIKGWFTPATDGVKK
Ga0247836_10283605F083781GGAGGMININREKFEKEILDLAKKGNGNSPSFTGGSLYAEMIDTDHAELLRADLEDFTNANWGDGTKTSPYSTAVKMYKLADQNGRTEFVYDFVPSATAEDLPPEVDMMLCLEAEIARGK
Ga0247836_10283606F080943AGGAGMISDETKIRLRELEGQRITLEDELDRLAYTNNFARIAELEGELFDVKDSIRKITAGHWFEDISRAELQKEEATLQ
Ga0247836_10283607F074452GGAMIPDNKSFGRHGGGRLGTDPFTRAEISETQRAQDYWEMSYVDEGNRIRYRLSCVLVEEEILDLLYCHGHITADQQAATINQARRTE
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