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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027728 Open in IMG/M |
| Scaffold ID | Ga0247836_1025446 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4142 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011754 | Metagenome / Metatranscriptome | 287 | Y |
| F014503 | Metagenome / Metatranscriptome | 262 | Y |
| F024537 | Metagenome / Metatranscriptome | 205 | Y |
| F042301 | Metagenome / Metatranscriptome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247836_102544610 | F024537 | GAGG | VKNLEKEILDELGTKMQSEIDREIMWGMLKNLGWRRVNLDRFTDNNHAVDITHWLAEHCNHAFERRGADFIFESEVDAVNFTLRWQ |
| Ga0247836_102544611 | F014503 | N/A | MAMSTSVHHWRFNDGVTPINPGNPFGETVVPRSWTCWVYPEDNHEFEIWMTRMCPTSDFTPRFNSGDPMWTVNITDDKEATVFQLRWM |
| Ga0247836_10254465 | F042301 | AGGAG | MIKQGSKWVGNEGSIFRVIHVIELEGHTWIHYIKENAPEDSDREYSCYEESFLSRFREHTND |
| Ga0247836_10254466 | F011754 | GGAG | MKIGFSLGRCVRDIVKGSVDINDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGLDEDKCQTVALELWSTNKILQPRRQGLHRHRQPENSIWVDMFPTELSENHSVKSAWDAYRFMLHMTENVDNEAVEIFKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |