NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1023536

Scaffold Ga0247836_1023536


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1023536 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)4415
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F014613Metagenome / Metatranscriptome261Y
F045061Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0247836_102353611F045061AGGAMAITSKEINFNQLDRELGSEGLCWDDNDPTAKIIKPADNSTITEEELEAAIEAHIAGPTDYEIRVLNRQQGLAKLKELGFTDDEITALIS
Ga0247836_10235362F000545N/AMKQDAHPFMCSNCKLVCAHTEVQRYNTEDVEDAPSEVWLIECQRCFMQRIIYPSDRVASKEDDIVRCNQCGGWKMKAAKCRICRLAAGFETLQVNYFTGHQNLKRPYADL
Ga0247836_10235363F000645GGAGMSNWLEDYEGVWDRFEKFKNDYPDYRHKSHILAESLIAQSDVFIIKTELYRTWNDPEPFATGLSSEVKSKQYSIELCETGSLGRALMMAGYPAKPKGFAKKPIETTSPKLAEFVKEQRPNDPEPIVWDVSQVVEQLGATVVDEMPLCQGGCGPMVLKTGTKEGKEYRGWVCPKRDSGHPAKWMKIGADGHWVFK
Ga0247836_10235365F014613GAGMFPNLSDTWVVGISILVPFAGLYIWALWNSAKAKAFNEGYKRGRATRMVRDGS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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