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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027728 Open in IMG/M |
| Scaffold ID | Ga0247836_1018708 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5335 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (30.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016774 | Metagenome / Metatranscriptome | 244 | Y |
| F036564 | Metagenome / Metatranscriptome | 169 | N |
| F049419 | Metagenome / Metatranscriptome | 146 | Y |
| F062446 | Metagenome / Metatranscriptome | 130 | Y |
| F064403 | Metagenome / Metatranscriptome | 128 | N |
| F096610 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247836_101870810 | F096610 | N/A | MANRPKTYFVKMTDNTNGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRASDILTK |
| Ga0247836_101870814 | F049419 | N/A | MKLPRLNLLDLATTYIFFGLIYGTIVTLTWNYLFEPITFVHLSILQGFGIHLITRILFGNTNTNYVSNFYTPKTPDLDKIDSYLKEMQADLDKEADEVERQYEDLDKKD |
| Ga0247836_101870819 | F064403 | GAGG | MTKGIIRHIEPREMILTKLKQSYLKEHSVTLVDRILRYLNNLTDFQLCELYSEKFDTNSKYIAEQYEFNF |
| Ga0247836_10187082 | F062446 | N/A | MIFNIKRIIAFIFVVLAWILFTFFFIGCASVDKVGQKEGWIPNGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGVSY |
| Ga0247836_101870820 | F036564 | GGAG | MKLGRISLDLNYIVDMDNDDMVAHATEALYEDLMQGVKYGDLANWISISEDKNAKEDMIPEFLLEEQND |
| Ga0247836_10187087 | F016774 | N/A | MPPKKPKIEFLSEHIASLNHWRDQLLALEKSYYSKDPEKQRTCRNMINKYLDDVLTHNKNIKEKSKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |