Basic Information | |
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Taxon OID | 3300027728 Open in IMG/M |
Scaffold ID | Ga0247836_1016092 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 6061 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 14 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000710 | Metagenome / Metatranscriptome | 925 | Y |
F002259 | Metagenome / Metatranscriptome | 577 | Y |
F005775 | Metagenome | 390 | N |
F006697 | Metagenome / Metatranscriptome | 366 | Y |
F025444 | Metagenome | 201 | N |
F042709 | Metagenome / Metatranscriptome | 157 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247836_101609210 | F000710 | N/A | MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSTTSAAPATLVNATQLRVTLTINNDVVIDDVIAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI |
Ga0247836_10160923 | F005775 | N/A | MKKQRPIYTKAQHQIVTPAYVEKKIQMHKNIKWTTKDGRDLFLMASASVTRYVAKSEHNDQAPMGFFNMQMGHYNKISIHTRDFRQLADVLLQAHLFLLNNADKLDQVVTKELDTYTTYHLKNLLDTNEQP |
Ga0247836_10160925 | F025444 | N/A | MYLQLAGPSPLDTAENPLAPGAPTYKYDQMYLGQSQDIILPDALFPANVEGYAKALKDLEGLYNKYAKGIKKKITDKGMSEPISFAVIMGTLQAIGAGFQALSTVARSAQISLARQRITELYNNNTFNVQNLNRLSPTQLSNAMTQIDEQINMTPRTQFGRQMALARFRLIYQQRFDQISGGGGIGNLPGWVLPAALGLGALLILRGRR |
Ga0247836_10160926 | F042709 | GAGG | MNPLVLVGAVALFLLLRKKPPVVVDNTTPDVVPFTAANVNAYKNLNTSSTFDNRLAKEARRVTPDGTGKNIVDGSYKCFAPGNQSRRAAIIKVYEDLDRLQTQINNSTGERREEYRKDRREKDDERAILVAEHYMICEAFFEELKKKAATPQQTVITTAQQTRSAL |
Ga0247836_10160928 | F002259 | N/A | MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSIGTAATNFTFFKGASQRAFPFTNVGANGNQFQVNEALLVEKIGFFIPSAADGITYAGLGTNSVKFDFVIGNKTVLKDVSCEFGGEQAFWNDGAVGSSVIDLEGVGILIPPQVEYYVIAKPFSTGARASTSIRLGCYLFGTGALLNFNTTI |
Ga0247836_10160929 | F006697 | N/A | MANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFEFFTNFAGKTEFQSNLTTNKLDSAESMVIKSIQIICASEGIDLAQHLNLNVFVGNQNVIKDFDPSFNASTRGLAFDRLHSGLNDGKNLEIRLLTEIVIPPQVNFKATLQFGGTTMNADDDVTIVFKGYGRIFSAGNSF |
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