NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1009370

Scaffold Ga0247836_1009370


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1009370 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)9519
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.52%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002287Metagenome / Metatranscriptome574Y
F003659Metagenome / Metatranscriptome474Y
F004838Metagenome / Metatranscriptome421Y
F026828Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0247836_100937010F003659GAGMPTVSAADVLGRYLIAQENVPVYDLPNGTRIGEIKKGNSTAEVYSYVTRPGGQVWWQFDYTIPGQTPGAYYVLQKDGRFKLSTVAGNVNVTPSSLPSVDVFPDASGIRKYAVWGALGLAALLILRK
Ga0247836_100937016F000710N/AMASVNMISYRQGIRNKGFQVTVPTTGAAQTLSLSGLAKSFEGIIFSSTTSAAPGTLVNALQLRLTLTINNDVVIDDVVAHELGASVASGITTGFPAYIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0247836_100937017F002287N/AMSQVSKLSFVDGKLGAPTSGQQTTRVLFNTIEAPGTTSSLTFFRSFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQYATDGSLVDFGGFGFPQQTVSIIVGNQTVVKNLPIHFNQGQNGQAFDRLHENAGVRNQSLFASANIQNVMPCEIRLLTDIVIPAQVAFEVRVDSNSGVYGTGAVVCALAGYGKIFSAGNSF
Ga0247836_100937018F004838N/AMISAQDKIMHVANKLGLTSLKDMQASTGAVYDVDTELSGTIFSQATRHANPSVTNINENQFEVNEALLVETIAFYVKNATGEVENFQNIYGSNAVIVFDLIIGNKRTMKDTPVFASGSPFVFANTANFTATSGEINYQSFLPRHQVFMEGAGILIPPQVQWYVQYTIYNVVTGAIIAPTDATALGCYLFGTKVNLNFNTSI
Ga0247836_10093707F026828N/AMTTQELIVNAIVFVAGWILKRPAVVEAAVAKLFKKKEK
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