Scaffold Ga0247836_1006732

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1006732
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 12566
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (56.76%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y
F061803	Metagenome / Metatranscriptome	131	Y
F074795	Metagenome	119	Y
F074805	Metagenome / Metatranscriptome	119	Y
F088817	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_100673213	F012108	AGG	VRESLNMIANGCSLDMFEKIVCSLEVALGVNQRRVVTITGGMNTDNRIPCIKTIRLHTGWGLKEAKDWSDYLVGGWKYDKWYSAPADAKQSMTLKTPEAAEALLRDLTGLGCEGFLS
Ga0247836_100673214	F006543	GGAG	MKKFSFAVDVVADELDRDSVVDSIRDCLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETTEAVA
Ga0247836_100673217	F000325	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPSDCDYLGNGCYAEGSEKIYPGVRPAAMQNLVTDKNRIRAMILDAIRQGKSIRWHERGDWFLNGELDTEYLENVTWACESILADGKALPDMWFYTHIYDSRLVAMEKYMAVYASIHDANDKSEAAAAGFKLFAWCDSDEKIASKRPRNKAKADAWRAALPKLVVIDDTKYIVCPEIRRGRGVVTCTPTKGSVTCDLCVRGLGNVLFPSH
Ga0247836_100673236	F061803	N/A	MSTIDLTKQEAWKILDAIKAYSKDYTVSDSVTKVFNSITKKLQGVVNGK
Ga0247836_10067324	F088817	AGGAG	MDGYQLIAQLNEIVKDMVLVPNSWLPENFKDHRTDSVSLADLEDKCDSMERGETDHEEEKREKARRVELYRGMIQNGQEITYLSKGLW
Ga0247836_10067326	F074805	N/A	MVAVERLVFLTKGFDMNDVVVIGGIFAAVCAVCVVFLFNAVYGGSKANLANAAEGQVFNFTYEQPLHGTHERFLAKVIGKQTLTADQIRRLNSKSRYRANDPEFIRTNHLVTCRTADGKVRNFYAERVTNCRKPLLAGALFGSGVAARLF
Ga0247836_10067329	F074795	N/A	MTKEQAIVKILKVLKNPMMVMSVYNRDEALTLAEEYGITAKDLIEEWTRIAERI