Basic Information | |
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Taxon OID | 3300027728 Open in IMG/M |
Scaffold ID | Ga0247836_1002829 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 24355 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (32.35%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 14 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004366 | Metagenome / Metatranscriptome | 441 | Y |
F008926 | Metagenome / Metatranscriptome | 326 | Y |
F010620 | Metagenome | 301 | Y |
F037224 | Metagenome | 168 | Y |
F072337 | Metagenome / Metatranscriptome | 121 | N |
F094950 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247836_10028291 | F008926 | N/A | DFITDEPVKLYDDAMDAIRYATTHIRQEYYTEDSYYAF |
Ga0247836_100282910 | F094950 | N/A | MVTILGREIPNRIEELTIEQFENISEISNNKEIDNIDRHLQIFASLGIPESEFFDYDVADFIDIVKKFNEQPKTEYPVVETIALDGFTYTAQLKLTVRDTKLIETIAINKPKGYISGILAIMFKADHLTVTEHYADAHLKLKAKNISKLKACIAIPYIMFIANKIKNQVENVPTEAVE |
Ga0247836_100282919 | F010620 | GAG | MRYILPIIALCLLGSCSSAKKAQYHYKKALKHGLKLVTQSDTIRITALDSFAVIRNDTIVYEKFITTKDTIIQFNNIYVPKTRWQTRIEYRYKTKILKQDVLKYKYIYKDGKIKKAKTNWMLFVYGLIAGFLVSFVLRILDKLYNPLR |
Ga0247836_10028292 | F037224 | N/A | MHSETIHKIQVVQAYIHHKTGKQVQIVFNNPMRVQQHLAMLDHAYMIAGGFKNNNSNEANIGKEK |
Ga0247836_100282924 | F072337 | GAG | MNRVWLEDSVEPEGGSWWNCYLGKDGKLHDYIFTDEQADTPQWYIDNGYIVEEV |
Ga0247836_10028296 | F004366 | AGCAG | MNSLQAIVNEITAFYNAHLQVQKVGSDFKEQMYNFCTKNEKYPLVYIVPSGVIPTENTTEFSFDIYCYDIIQKDRANIITILSDTQQILSDLNVYFNDSSDFSFDVVGVPTFSPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI |
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