Scaffold Ga0247836_1002829

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1002829
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 24355
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (32.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004366	Metagenome / Metatranscriptome	441	Y
F008926	Metagenome / Metatranscriptome	326	Y
F010620	Metagenome	301	Y
F037224	Metagenome	168	Y
F072337	Metagenome / Metatranscriptome	121	N
F094950	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_10028291	F008926	N/A	DFITDEPVKLYDDAMDAIRYATTHIRQEYYTEDSYYAF
Ga0247836_100282910	F094950	N/A	MVTILGREIPNRIEELTIEQFENISEISNNKEIDNIDRHLQIFASLGIPESEFFDYDVADFIDIVKKFNEQPKTEYPVVETIALDGFTYTAQLKLTVRDTKLIETIAINKPKGYISGILAIMFKADHLTVTEHYADAHLKLKAKNISKLKACIAIPYIMFIANKIKNQVENVPTEAVE
Ga0247836_100282919	F010620	GAG	MRYILPIIALCLLGSCSSAKKAQYHYKKALKHGLKLVTQSDTIRITALDSFAVIRNDTIVYEKFITTKDTIIQFNNIYVPKTRWQTRIEYRYKTKILKQDVLKYKYIYKDGKIKKAKTNWMLFVYGLIAGFLVSFVLRILDKLYNPLR
Ga0247836_10028292	F037224	N/A	MHSETIHKIQVVQAYIHHKTGKQVQIVFNNPMRVQQHLAMLDHAYMIAGGFKNNNSNEANIGKEK
Ga0247836_100282924	F072337	GAG	MNRVWLEDSVEPEGGSWWNCYLGKDGKLHDYIFTDEQADTPQWYIDNGYIVEEV
Ga0247836_10028296	F004366	AGCAG	MNSLQAIVNEITAFYNAHLQVQKVGSDFKEQMYNFCTKNEKYPLVYIVPSGVIPTENTTEFSFDIYCYDIIQKDRANIITILSDTQQILSDLNVYFNDSSDFSFDVVGVPTFSPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI