NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247836_1002589

Scaffold Ga0247836_1002589


Overview

Basic Information
Taxon OID3300027728 Open in IMG/M
Scaffold IDGa0247836_1002589 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)25956
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (25.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001883Metagenome / Metatranscriptome622Y
F004366Metagenome / Metatranscriptome441Y
F010620Metagenome301Y
F010918Metagenome / Metatranscriptome297Y
F013186Metagenome / Metatranscriptome273N
F019139Metagenome / Metatranscriptome231Y
F037224Metagenome168Y
F072337Metagenome / Metatranscriptome121N
F094950Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0247836_100258911F037224AGGAGMIVTMHSETIHKIQVVQAYIHHKTGKQVRIVFNNPMRVQQHLAMLDHAYMIAMGGFKNNNSNEANIGKDK
Ga0247836_100258914F019139N/AMKIKTEHLGKYITMYNGNYETSFTVTEETAKDHKYYTSKGLGYLFEESTPKAKYKGVENEDKKEKDAEA
Ga0247836_100258916F013186N/AMKRLLDQYISRSYPEVRAYTTYFLSKMGLYIDADTVINNSYIHVLTINDYVADEDKVKSYLLNTIKYQILWNTSKSHKDDRITAIIDNSGDRMEDDELADKIREDKMYAFNKGLIEIYRSEITDQVQKIVFEAYIDKGYITSRALATYFDITHTSAYYLIKDLKQNINKLQYRYETESIY
Ga0247836_10025893F094950N/AMVTILGREIPNRIEELTIEQFEAITDINNNKELDPVDRHLQIFEYLGIPESEFFDFDIADFIDIVKEFNTTPNLTNNTEPIGTLELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTKAEHYSEAHLKLKSKHIRKLKAEICIPYIMFVANKIKNQVENVPTEAVE
Ga0247836_100258930F072337AGTAGMKKYRVWLEDSVEPDGGSWWNCYLGKDGKLHDYIFTDEQADTPQWYIDNGYIVEEL
Ga0247836_100258931F010918AGGMKRYKVTYNYFDGGKKRIAVKILEALDRDHAIMIMAMWPKLILKVEQYEKI
Ga0247836_100258936F010620N/AMRYILPIIALCLLGSCSNAKKAQYHYKKAVKFGLQLVQDSDTIRIISVDSIPVVVNDTIIWEKVIRTKDTIINFKNIYVPKTRWQTRIEYRYKTQLVKQDVLKYKYIYKAEKKQKAKTNWLLFIIGFGCGIALFFILRLLDKLYNPFK
Ga0247836_10025895F001883AGTAGMGRYANTGEFNVLYPTRRRMATILKRILRNDIVDGEGTLVESIRINAKITGFEKLEIQIIAMYYFIFLNNGAFLWNGGVITPRDYVAQFTDELNSAGITAEIYAQYTEWLTKRFPILDVVEVLQKNQRIVYTFEALDPPAGFTPGFPLDV
Ga0247836_10025897F004366AGCAGMNSLQAITNHITAFYTAHKQVFKVGCDFKEQLYNFATQDEKYPLVYIVPSGVIPTENTTEFSFDIYCYDIIQKDRANIITILSDTQQILSDLNVYFNDSSDFSFDVVGVPTFSPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI
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