Scaffold Ga0247836_1001766

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1001766
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 33354
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (39.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F010682	Metagenome	300	Y
F039113	Metagenome	164	Y
F045546	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_100176613	F010682	N/A	MVYTPLTNWRYDNSLYHRIQSGPQRTGDNLNLTDTYKVLSSGYMLPSGVQQTWFGVDLEGADFGLIPVGPPNISGYLNTEWRAVPPAISGYWTNYENTLPHASGLLDTYVGFRAQGRYSVAGRTVQTALGPQPGLKDFGTYTWFGASVPDNQNYDPFKTPNSNTPYEYDSDLGAFVGNGITGGPGSFQRVRYPALTNPTNDTSGSRAAWVYSPPVYCQVFTEAIRSDLPGQMSVVSRTSYRGKSTRYVPNYGSVYGVLGEGVRNMIRKVAG
Ga0247836_100176623	F001215	AGGA	MSSTSTNKQPLMVDRPFLRGAKVNNGTTVVTNTSSPDFGDLIQLVRVGDLPSEDGALVEDIFVVANEGYPNNGGVRSAAFGVYIYAPNQAAPSTSASLLISKFEVGLSGDTEGLIQRVELPATVAPTPQTGDTNLVRPIEIGKSEALYLEKGYILCVGYLGNGPAAVSGGLSASGLSIFAQGGFY
Ga0247836_100176624	F045546	AGGCGG	VARKKGSDDFLPNGPRPLGSFKPISNIIGSDKKSQLLRPLPFKRRFRPAINTKDFSVVSEYNYASLWSRWRRGYELSMYAQGAYSGLIYSSFKYYVSGTAGVGGYIPGLFFVYPTLRSDMRMHMVGIRPRDTFNFLDFGISIQSVTQYDETTYAVVLSQRFGSPISYFTGEVLSNRFNSDGTEKQFGYSNYTVTAVGFNGVILEPSINPDFNTLFLSFAADKSWSVVNSTTIVVPATGPPLVGEFLTTEIRVQCSCQDFLNREGFNFYNLSVKQRYPYTSILNVDPGFFDGGPNASGRVSPSNDYPGYARTFGFIYLNKIYTIPSYEDTAVYSDPSLFYFQPKWCKHIYAAFWDMQRKFRLFNVTTSRLPQPNDEPLDEYYREKFEVDLAKQNSFLRREEDLVWWSRYSPSLGGLPKHLLYADKYNMIAKTLNFGQLDDLTELQDTNFQLFTINDFNPLNPAALPQEIYDGGTYSDGVVITSSSNILDGGQYTNGELVPPSYPPTFINGGTY
Ga0247836_100176635	F039113	N/A	MDSALREIKQIRDAIISIDTSLQLIALSKSSDKRTTVFVSKKVICQRLNVPTVTLDKLIYQGITSGGKSGLVQGIHYCKTDPAEQNSSKFLYDPHTIIQSAWSNFQNNG