Basic Information | |
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Taxon OID | 3300027728 Open in IMG/M |
Scaffold ID | Ga0247836_1001766 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 33354 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (39.58%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 14 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001215 | Metagenome | 746 | Y |
F010682 | Metagenome | 300 | Y |
F039113 | Metagenome | 164 | Y |
F045546 | Metagenome | 152 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247836_100176613 | F010682 | N/A | MVYTPLTNWRYDNSLYHRIQSGPQRTGDNLNLTDTYKVLSSGYMLPSGVQQTWFGVDLEGADFGLIPVGPPNISGYLNTEWRAVPPAISGYWTNYENTLPHASGLLDTYVGFRAQGRYSVAGRTVQTALGPQPGLKDFGTYTWFGASVPDNQNYDPFKTPNSNTPYEYDSDLGAFVGNGITGGPGSFQRVRYPALTNPTNDTSGSRAAWVYSPPVYCQVFTEAIRSDLPGQMSVVSRTSYRGKSTRYVPNYGSVYGVLGEGVRNMIRKVAG |
Ga0247836_100176623 | F001215 | AGGA | MSSTSTNKQPLMVDRPFLRGAKVNNGTTVVTNTSSPDFGDLIQLVRVGDLPSEDGALVEDIFVVANEGYPNNGGVRSAAFGVYIYAPNQAAPSTSASLLISKFEVGLSGDTEGLIQRVELPATVAPTPQTGDTNLVRPIEIGKSEALYLEKGYILCVGYLGNGPAAVSGGLSASGLSIFAQGGFY |
Ga0247836_100176624 | F045546 | AGGCGG | VARKKGSDDFLPNGPRPLGSFKPISNIIGSDKKSQLLRPLPFKRRFRPAINTKDFSVVSEYNYASLWSRWRRGYELSMYAQGAYSGLIYSSFKYYVSGTAGVGGYIPGLFFVYPTLRSDMRMHMVGIRPRDTFNFLDFGISIQSVTQYDETTYAVVLSQRFGSPISYFTGEVLSNRFNSDGTEKQFGYSNYTVTAVGFNGVILEPSINPDFNTLFLSFAADKSWSVVNSTTIVVPATGPPLVGEFLTTEIRVQCSCQDFLNREGFNFYNLSVKQRYPYTSILNVDPGFFDGGPNASGRVSPSNDYPGYARTFGFIYLNKIYTIPSYEDTAVYSDPSLFYFQPKWCKHIYAAFWDMQRKFRLFNVTTSRLPQPNDEPLDEYYREKFEVDLAKQNSFLRREEDLVWWSRYSPSLGGLPKHLLYADKYNMIAKTLNFGQLDDLTELQDTNFQLFTINDFNPLNPAALPQEIYDGGTYSDGVVITSSSNILDGGQYTNGELVPPSYPPTFINGGTY |
Ga0247836_100176635 | F039113 | N/A | MDSALREIKQIRDAIISIDTSLQLIALSKSSDKRTTVFVSKKVICQRLNVPTVTLDKLIYQGITSGGKSGLVQGIHYCKTDPAEQNSSKFLYDPHTIIQSAWSNFQNNG |
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