Scaffold Ga0247836_1001653

Overview

Basic Information

• Taxon OID: 3300027728
• Scaffold ID: Ga0247836_1001653
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 34845
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (78.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008023	Metagenome / Metatranscriptome	340	Y
F012098	Metagenome / Metatranscriptome	283	Y
F016389	Metagenome / Metatranscriptome	247	Y
F019997	Metagenome / Metatranscriptome	226	Y
F086580	Metagenome / Metatranscriptome	110	Y
F089937	Metagenome / Metatranscriptome	108	N
F093195	Metagenome / Metatranscriptome	106	N
F093225	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247836_100165312	F012098	AGG	MPKAHKIGPKHFVQLTNFPFKWGFKVIVRGWTQEIEPPYRTSTPFIVRLPKYKALVFGAWSGMKDEEEALSTALGRREVTYNDFTKEAGWTPAPESDRETSLEDLYSRFSLMDGAVDVHDWKTYYDMAKAAE
Ga0247836_100165315	F016389	N/A	VQGHAVPLHSHSPRGPFPPEVLAQPQMEVDPQHSDSLHEALDSTRFFKCRACEEVLLETDLDNHDCEEINGYE
Ga0247836_100165318	F093195	GGA	MAGAIDKGHQSYNDFNSGAAAKQNPLTTVDRKMLDFAVKVSRNPVIKTHGQIVRNFGMYPPEFWTRAQKLSDHPEVDPQTKEQLSNIFSDPSRPGPMTGGAPINVNGKQFSHGLEW
Ga0247836_100165320	F093225	AGG	MTNNMIITIFATVGIITAALLGLRQLIEPYKEKADLFMSWFEDFKRDWSGEEESPGRDRVPGVMERLNRLDGELSSNGGSSTKDVVNKMYDNQGVLMEAFVEMGERLISIEEHLAVNKSKEPV
Ga0247836_100165321	F019997	AGGAG	MDKKALEAAAGTYLRAAAAAVAALYMSGITDPKTLANAFLAGLLGPLAKALNPKDPSYGFGAKK
Ga0247836_10016533	F089937	GGAGG	VATISSLADRLRSEIGDIPKSFVYTFTADGTTNRFLIPYSPLDGANLIVTKNGTDISADVEVEEATGYIVCDDVPADGDDFIVAGNYFRYFTTAETQTYISTAFLEHSAFHTDAYGRSVSLQNLPTLEEYPVIIYASTLALYALANDAAFDINVFAPDGVTIPRSERYQQLMQMIESRKQQYKELCSQLGIGMFKIDVFSFRRISKTTNHYVPIFQPQEIDDRSAATRVHLPTPTYGNVETPVSIITQDLFVYEGDAYEFTIVLDFEVDTYTAKADILGVGIPGVITTFTITFPIVGSADGEGLRTLKLALTGTQTRMLPRTSYYDVQLTKDGVTTTYVRGKIFKTEEVTE
Ga0247836_10016534	F008023	AGGAG	VANTQTSPLDATGKAAEQATKKNAEALKKRKEEISIATQLETESLEKDVFDPKKPDAPLVLDEIENVGVSTAGDYVVIRTITDIDDMSYGVGNIYTFKAGVKYRVPRSLADYLEQLGYIWRPN
Ga0247836_100165356	F086580	GGTGG	MTTQTKDSFYLERLKTKFNTGEAYWSVGETGTAVWQPHTRNKFDVLTEHKLVDITFDEQIYKGFQLILIGFHYEFRTVLDLNGNPSSSYLADDEIGGYMNDVKSFTYYEGMAYEIGGVKDSQQNLNWLGECATLYMYGGDTDPNKTIKKCQKKLDLLSQIVSVRDELISISTERAGSYDTKNPYNTNVGDLVFIQAHGRLR