 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027728 Open in IMG/M |
| Scaffold ID | Ga0247836_1000233 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 104351 |
| Total Scaffold Genes | 117 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (23.08%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050364 | Metagenome / Metatranscriptome | 145 | Y |
| F064721 | Metagenome / Metatranscriptome | 128 | N |
| F071252 | Metagenome / Metatranscriptome | 122 | Y |
| F086587 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247836_100023326 | F050364 | N/A | MTPKNYATYQNTKVGDKIEFRKAGPHWFTNRIENAKKLVSGQVYTVKKISVASSSTGVILEETDEEVELTWFDTINLD |
| Ga0247836_100023331 | F086587 | N/A | MKKKNNETFTEYKYAVYHKPTQKWVWFGNDEIEVIVSCIILVDFKDCLVSDSKGYLEMFLRTSAFNNTPNYGNENFLEFELVKIKTTYTIEK |
| Ga0247836_100023332 | F071252 | N/A | MNKKYDKFLKKALDKMFQMVGLEKFDKNLAEQEDWYSKKTWTKDQSEEFKKWLVAEGKKDLKFTKQMMEKEHVWFNLKWGWKEKQ |
| Ga0247836_10002335 | F064721 | N/A | MMTLKQKIVSHVIVGGLFRFSELIANIIMWLMRLFKTKKPYYLYVYLKYEQDFLYPLAEKICYCLGLKKEWEVHQEGLDRLHKLIFGEDENKD |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |