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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027728 Open in IMG/M |
| Scaffold ID | Ga0247836_1000227 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 105172 |
| Total Scaffold Genes | 166 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 119 (71.69%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005563 | Metagenome / Metatranscriptome | 396 | Y |
| F018683 | Metagenome / Metatranscriptome | 233 | Y |
| F035734 | Metagenome | 171 | Y |
| F044320 | Metagenome / Metatranscriptome | 154 | N |
| F102582 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247836_1000227114 | F005563 | GGAG | MIDYSEALREMHKGNVVKYVGTVNGNVMSDRGASFCMCRGCIFLFDDGAIKWNKLGYMVYDPDFRYELTGATVDPRAWKPEKNKDRKDIKSRLGYSRIGLGNV |
| Ga0247836_1000227118 | F018683 | AGGAG | MNMKRFRTSQKFRVIVGDACFYATAKQIRNGVGDFVNCNAATQKALNALEAYRSGDGVEMCSTGLGGTWEGLQVQLNMA |
| Ga0247836_1000227144 | F035734 | AGGCGG | MNQSFRHWLVELWRENCDELDGYGQPRHTFKEYFVRYKWWLRREYQYQRNARRLS |
| Ga0247836_100022754 | F102582 | GGA | MRATEFLCEDLLPGFHVYSASVRVKNPSYTTSIDVAIFAKSPAMARLLLQAQYGKDSIVTNVHRIDT |
| Ga0247836_100022779 | F044320 | GAGG | MSRGSRPRKSTVDQEELANRHESIFGKKLPKERYVPPPLPAELQTQSSHEQQLGKNIPLGRT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |