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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027727 Open in IMG/M |
| Scaffold ID | Ga0209328_10001439 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6558 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Algoma, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004003 | Metagenome | 457 | Y |
| F004186 | Metagenome | 449 | Y |
| F004349 | Metagenome / Metatranscriptome | 442 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209328_1000143910 | F004186 | N/A | VLVAALAAGCGVPTPLAPASAKEVLTKPQQSSLKEAHFKVTGKIADNNATIDIVGDGAFVYKPKLAGRFQFTTTVSGQTATIKEISVNGMNYGLTPASPKWVASPSTMGIDPNAFAGKSDQKYIGEENLPQGKAWHVTAKDDGGNAYDAYIRESDGYPIKYVETQGGGQNITLTFDQYNTGEMIAAPPADQIQAG |
| Ga0209328_100014398 | F004349 | AGGA | VKTRTWIVLPISALVLAACGSSAAAKPPTAQEILAKPDAANVKDGHFSLVAHIVSGNIAFDATGEGIIVVKPQQASRFTMLTTIAGQPLKFEEIIIGGKEYDLAPDNPRWTVKPSTNSSNPSSFKGTNATYLGEVTLAQGKAWHVKATDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPQASDIQQ |
| Ga0209328_100014399 | F004003 | GGA | VIASPKRIATAIVAVGVLAGCGGPGTPLAPPTAKDILSRPNQANLKDAHFLVTGKGSTQGSVVDLNGDGTIVYKAPGAGHFKFHTAVAGQQITVDDISINGIDYTLTVPGNGKWTARSTSSGFGPGSFAGASEFTYVGEESLPNGKAWHAKAKDKDGNQFDGWIRESDGYPLKYQITQASDQGTNALTLTFDKYNTGESITAPPASQVVQG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |