Scaffold Ga0209178_1134798

Overview

Basic Information

• Taxon OID: 3300027725
• Scaffold ID: Ga0209178_1134798
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 845
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014061	Metagenome / Metatranscriptome	266	Y
F022492	Metagenome / Metatranscriptome	214	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209178_11347981	F014061	N/A	SHEVVNDVGVRQLGGLASELAKQTAEKAQEQQDVVLKDAQQLDPDSLYKLPLIGTWPPNEEEEPEPGAGA
Ga0209178_11347982	F022492	AGGAGG	MAGSRIEGAGLRGIMRLTWVEDHLAHVLDHGGTGEPAGAWTGLACPDHGLALGGDVDDATLRRLSARGAIADLIWEPRPELAAEHSQLLQAAIQAAQDGKPDRGEQLRQQVQAIWSLAWSANYAALKSVQDAGLSRFSPARPQRWVAASFEHHRGPHGRPHPHIHNIVITTLTTGAC