Scaffold Ga0209178_1012947

Overview

Basic Information

• Taxon OID: 3300027725
• Scaffold ID: Ga0209178_1012947
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2612
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F046497	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209178_10129473	F046497	GGAGG	VRFLCFVTGICGLGLLLCAPVYGQGPGPETAPPLFPGGGLVSYNSIFTTRGMPDTASVPVTARPTLSHERDFNFTWGLHPNFDVTVLVPIITNNFQAVNAPVVGGTGLGDTMVLVKYRFYRRDSERGTTQASITLGPKLPTGRTDVSSVNGTLLPASLQPGSGSTDLFVAGNWTYTGLFNFRRIVADEDFHAFVRSQGTQAVRLGNDLGSRFWLSYRPYEAKDGAREWFIGPVLTWLHSQDDRIGGVTQNGSGGGELLTGITTYVGVRPGMHVWFGMDWDVAQSTGASFMPIRRHISFGITQQFRMHFFK
Ga0209178_10129474	F004042	AGGAGG	MSPKRIALLLFLGCVLAPVSQAQIKHIEMRVEGMT
Ga0209178_10129475	F000092	GAG	VKQSLGRQSGVQSVEVSLLNGTAEVTPKEDGQIDPAQLLNVTYDSGVTVAEMDMTAEGKIVKDASGNLALQVEPNRSFELVPNELSNKLQDLAGTQATVTARGELYKKPAGKKK