Basic Information | |
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Taxon OID | 3300027725 Open in IMG/M |
Scaffold ID | Ga0209178_1003494 Open in IMG/M |
Source Dataset Name | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4957 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.8834 | Long. (o) | -83.4195 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000624 | Metagenome / Metatranscriptome | 977 | Y |
F000781 | Metagenome / Metatranscriptome | 895 | Y |
F002853 | Metagenome / Metatranscriptome | 526 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209178_10034944 | F000624 | AGG | MPSHWYGILAAIFSVAAQFVLFLRWLHRRMRNDEIMRAFVRDIATNHLPHIYDALHKIAARQGITLDETPLVRFVDLNGHTHRHH |
Ga0209178_10034945 | F002853 | GAGG | MSRAQDYTRQLTDQQLANLNSLNQQFLGQQQQIGNLLLPQFQSILNNPGLSPADKAAVTGQSQGALASAFDALQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRNNASRNTGGFFSALGSGLGSTLAALPGAFL |
Ga0209178_10034948 | F000781 | N/A | MLTISQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPSPVASITVQAANGWFDISVADPSDARPGLFYFAESDVTPAFSTPRVYFMGASRNLYVQLGNQTLFWRAYSQYIGSQPSAPITFGSPPVAVVGGGSSGPAPLPSTGSGVFPNGTLRGANGFGIHPGSRILRQSIL |
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