Scaffold Ga0209819_10040482

Overview

Basic Information

• Taxon OID: 3300027722
• Scaffold ID: Ga0209819_10040482
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1591
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003830	Metagenome	466	Y
F008593	Metagenome	331	Y
F026141	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209819_100404822	F026141	AGG	MSILIEVSALVLGEWLLVTPPANDITRPQSEWQQEQSFDTLEQCVSYRERQADEWIKRMETIPEGSPDYKIYEPAATRYLLGKCILTEKAPT
Ga0209819_100404823	F003830	AGAAGG	MIDDDTLKQLLRINDELLQLCQWLNEKRDMETSSRLIPLVDDLTHILIEAGKNKLH
Ga0209819_100404824	F008593	N/A	MMQPYKGYFIEGSALMVHPFSRDWYVGGSVLVPGRASSIVEITRFQLQQFTVSIKELAEWFGLEVARIVLDECLAQREN