NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209819_10000126

Scaffold Ga0209819_10000126


Overview

Basic Information
Taxon OID3300027722 Open in IMG/M
Scaffold IDGa0209819_10000126 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21555
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002914Metagenome / Metatranscriptome521Y
F008593Metagenome331Y
F016700Metagenome / Metatranscriptome245Y
F021132Metagenome / Metatranscriptome220N

Sequences

Protein IDFamilyRBSSequence
Ga0209819_1000012612F021132AGGAGLGRSLEKMDRSVITMLIFYCNRCNEMITGGDYESTDQIVDRLDEHIEKCPPATFTFEGTTGVATQRLDALRSFHEDERRAGKTRLH
Ga0209819_1000012617F016700GGAGGVKSINARAALISLFLGLGTVTQCQAEDYYVYQTPNGALLISNNPPPPGSKIIKQLNLPEDDQTQELGKPQPNVQPEGASKPSKSK
Ga0209819_1000012620F008593N/AMMQPYNGYFIEGSALLVHPFSPDWYVGGNVLVSGLSSSIVEITRFQLQRFTVIMKELAEWFGLEIARLVVDECLHPRRN
Ga0209819_1000012621F002914AGGAGMNRVCQHCGELIVGNAYRVTSEEEGMILINMVVCSLCAVEAKRLRLNTDEINIGTKHPSARNQGSQRSPWKLPPVLKKPTG
Ga0209819_100001263F016700GGAGGVKGINARATLISLFLGLAAVTPGQAEDYYVYQTPNGALVISNKEPPPGSKIIRRHKFPDVTDTEVSQGQEPGKPQPAGSPKPAKEK
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