Scaffold Ga0209492_1009702

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1009702
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3203
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_10097021	F046382	GAGG	MNKRNWPYGTDMSEPNWTGRTARQMRDYKRPDARIPPVAWVMGLLALALVFGFFPLLSLVMQ
Ga0209492_10097022	F018369	AGG	MKYSYIQLTDEGKRQLMRDLSYELTDKVIAELIDRFADGVKTDRTGEPYIKIDREEVLVCVCPMYTHWIDVNHIETVTANEEDYE
Ga0209492_10097026	F016273	N/A	MTQSEEAILISWRIQQWYEGMVLDARAMQDLQDAIEMLKTLAKQVQK