Scaffold Ga0209492_1002530

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1002530
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5745
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin397 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F024730	Metagenome / Metatranscriptome	204	Y
F048156	Metagenome / Metatranscriptome	148	N
F075659	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_10025301	F048156	N/A	MNLLKTIIDRLNQRVEVANIFDKQFGLCELNANGNEKAWVHYIGNGQAEVVTNFDAKNGTLFWAKRGKVTVAKTDAYKMSGCKQLYVTSFPLTAYAVVRKSHLPCDGDDAQDWLASRIYKLTSGTDPQFKQNLGVINYEVIPSGYINE
Ga0209492_10025302	F024717	N/A	MATPKEISGRIDALFSEWSGGFTPLFMAVLDMRREMYIRIFGIDTGRGQNQEGNFLPTVPYSAAYAKIKAKNGKPPLELTGFLKRSFGTDQSSVSNQGFNSFIYLQADEAGKALGLEKGVASGNPKYKTFKGYGTIFQPTKEEQDRMLQLHADLLVEEISNQISKP
Ga0209492_10025303	F024730	N/A	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRSFAWRKMSTDILSRLTPMMKADTIVDGKRIGQVLTNNGNQQTALGATKYGGIRVKIDPNSLSFLNLYISDIYLAIDAANINVDILVFDMTTLKLIDTIVYAEGSLEQFLGKTFAAKRRKLDIAFVYESTMNAAKYITKKGHCYDCGGSVREAHICPFVDAIGIELTTDGTNVLSSKTSKYTTGMSLNYNVNCDRESWLCSIGGLMAMPLAYATAVEIYNYGLSVSPNQRVNTTVSINVGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPDDNTCFDCRRNMKYVTALP
Ga0209492_10025308	F075659	N/A	EPDNVQRQLLAISKQNAINAFFGSGLRERVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDTTDGRLLANVRTTAGTAQAIADRSYAAAVNEELGIEYFQYLGGEIATTRPFCEHREGEIYHRGEIEAWGNGENSAGINDIRNGTWAGRIEGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAKAEGYA