Scaffold Ga0209492_1000334

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1000334
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14857
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008078	Metagenome / Metatranscriptome	339	Y
F014956	Metagenome / Metatranscriptome	258	Y
F031407	Metagenome / Metatranscriptome	182	N
F031483	Metagenome	182	N
F052398	Metagenome	142	N
F060411	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_10003341	F060411	AGGAG	MVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPEHPKVELEAIQYMNERDSVYQKILPYAKKLKVGTKDVNQITMINQLNNILNTQEVKDNVRRFLPPLMVQWQTNDDELGTRLQIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVFIYSKIMSAINTPTETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAM
Ga0209492_100033418	F052398	N/A	MNLPAIAMTIEEKIQDVQLVIDNREKRLFKTGIIESLPKINEVVKNILPLYGIDASPEHLTEVTKFITTYKLIAVDEIKLAFEKFARQELKIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKLQEEQRQVEAKRKFYAEFPEMLTGFKGESYEDVPAYWYDAAMEAGLIGYAEGEKRAIWEEAQEIASKKKFKQTVTLILKPNCIGRRKKARRGRLS
Ga0209492_10003342	F031407	N/A	MTDKEKALIIIDLIAKITQEIIDKPMQRKRLLQMRGHLEKAVKLTGNGIKREWTRPPSIPLVSHAKAEPVPFKPSTMETNGDLLADNIPVTKKARRK
Ga0209492_100033422	F014956	GGA	MKIQEFALNASLTVCPSHIVEPDHLKRWWRQRGVGELEKWFVSGNSIHYNDEIDWKKISKHKKSLWYDSQNFQIQAGNEYSQRKG
Ga0209492_100033423	F031483	AGCAG	MNILKGKVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDNKLMALKKDDVVTIIHDGKSYKVAFDMVTANEIPEKVQTPTEQTNVQQAANVAPKTNGKLTAEEINEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF
Ga0209492_10003343	F008078	N/A	MTPEEKADELFNHYYNLIQSIGGELGQEILVSILAKQCALFAVREVLKEKWNIDVPGSQDEYYYWEEVEQEIENL