Scaffold Ga0209492_1000301

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1000301
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15927
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F058557	Metagenome / Metatranscriptome	135	Y
F078706	Metagenome	116	N
F083714	Metagenome	112	Y
F086839	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_100030114	F086839	AGG	MSVKFAVNGLKETLEVFKEFQEQFGDKDAKSKVLIPAVRDAMKPVLAMAKALSPKDTGALDRSLYVTARRPSRKDMKSRYVTPKDSVISLVSSRPIPKKLKQEFHAKYGNLKGSEYKKAKRSFYSEAGVMHDARAIANEFGTAKMSAKPFMRVSLESQAQAVAAKLGLILKQKMDSYKAKKSTT
Ga0209492_100030115	F078706	AGGA	MSKLGSALGKKYEENRLSVLTRSFQLGDHTFKVRVPSVSEIEAIYNYFKNPNLDKIEKEYQLMVKAFEGLEGKEGVEVKDNDFIIDGRSIRETATNKHVLQHRIVECIKFLIPETGSLEDITYEDVEAEFPLSVQMTLVEKINEVISPDYKDIKSK
Ga0209492_100030116	F083714	N/A	MVFNGHTIQDIDALDEATMNEITVMYADGLVGNRSLLNMQGTLIAGVFNYLRASNSQPYTIKSVLGSAYDYIYGIEKADPSDSLLSFMSQAPDFKMDRFQGK
Ga0209492_100030118	F000934	GAG	MASLNTILANSESIGITDQRFIGQTMSRNQRISTSEIITVQPFMFDMKPMNYLLYSQSRQLLSVLRAADRQFEQYLNFGATGWSSYIKYQGDMTGAEISLCNWKPASANKTLVLGDIPGTVLSSEYVVRTGDFCQVGRYAYIATADVIRGSGSTVSIPVHRTLITTIVSDIGAVIGQFGTTIALGGSTYLGTTFPVILQEYPTYTFIPMTNDSFIAWNGTFKAIEAVL
Ga0209492_10003019	F058557	AGGA	MAIKRYENVDVNDLTFGTNTYGDYTTTITKKFTTRPLVSDVKNSVAITERYRVYQDLIQFTFNYTPNLKDIVDHQDKYSITWRAKDWRITDAIESNDRMSVTLMCYRSDPTTRV