Scaffold Ga0209492_1000225

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1000225
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18604
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019103	Metagenome	231	Y
F038150	Metagenome	166	Y
F042221	Metagenome	158	Y
F051781	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_100022515	F019103	AGGTGG	MKTPVWTTGYKPTKEDLKGLYNHRFETAGGLVLDCYLAFEEEERATYDHPGSSASIELVWALVEGVDISEVIGDLVATIEDEALEDMAVAAKDDEYDRGQERYENRRDAK
Ga0209492_100022522	F051781	AGGA	MSILEEISVNRAPSHIVRHAALELQKKTKETLGPYVEREKQPGEVKAAENNLWQRTTYRTGDGDYTAQVPRAGSMDAYKLPSRGNRT
Ga0209492_100022531	F042221	AGGAGG	MTEDEAFEELERQIKYKLDSTRSTVVADDYFWILIDQDTPTNLKILLLGRSGVATMGHYEHLPGTQFWTHWAPLPRKRP
Ga0209492_100022535	F038150	AGG	VTDDDFRRLESKVDKLTDAVGKLILFEERQATQGERIGNVEVKLGIHDATLQRIDKKVDQWVNRGVGVWAAAAIVFAVVKYLDK