Scaffold Ga0209492_1000027

Overview

Basic Information

• Taxon OID: 3300027721
• Scaffold ID: Ga0209492_1000027
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45490
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (44.74%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F004049	Metagenome / Metatranscriptome	455	Y
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F012771	Metagenome / Metatranscriptome	277	Y
F015354	Metagenome / Metatranscriptome	255	Y
F057903	Metagenome / Metatranscriptome	135	N
F082111	Metagenome	113	N
F086598	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209492_100002717	F004049	GGAGG	MIVPIGPAAFVFRHKRTKQIVVAPSERWHEYYDNKEDWEHTASVNACGALQYIIDAKPAERNRYIKSLTEKP
Ga0209492_100002727	F012771	GAG	MNKPKPKRPVAKMFVVSDDTHKRLKEYAVKKGYKLQYVADEAVSEYLKRQEAK
Ga0209492_100002729	F003748	N/A	MFKVNRKDAGGSYINAEGEYTVTVMKVEETLDAKGREVCKVTFATEDGSSIADRFINQENVWFRVNQLVAATNHNVPDGTEVDFLGVKGSYANFLRSMIGLELAITVKSRKYEQNGENKTTFDVKSMKPVAASESEEKPF
Ga0209492_100002733	F086598	N/A	METDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALKRSSYQDVDDDDTWEGFGPKPECQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGQNGTPEQVAYIQRIEARLGRKIFENPLATT
Ga0209492_100002735	F001964	GGAGG	MIRNQFGPPKFKIQISGAIGWSDLKEKVVSYQTVEFATRKEADRAAKELNPGEYTQGRIRVVPFEMAEDYDVYPVVERVSEKSKG
Ga0209492_100002737	F002227	N/A	MKLTIQSKTNAQTIVDLFNAIITGECETPGVTPLSIYDDDRHICSLTDADGHQILELIIEREEGDKLMQIGEPETLQ
Ga0209492_100002749	F000922	GGA	MPKEVWQKACSLYLAGMEWDAIADKLKVNKTTLCKRASLEGVTKVKKEMQTVCIEKKTESLESLSILVRNRLAADAASTLERVDGYDLDGLKDEATRETILNSVAKRSALVFGWSEAGEQASVSINLLGSMPDRSSVEVVVSEPSDK
Ga0209492_100002751	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRTWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNELPWVQTGSVGQSLNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNPSWTTAPYEGAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKFNTDCEDPLEKKGQHYAEFIHASEPVFTNQGMTIIFRRCTGALTQIICS
Ga0209492_100002760	F015354	N/A	MNANIASLIRHILTAAGGFLVAKGLASADQVAELAGAAVSISGVAWSIFNNKKNASKTE
Ga0209492_100002764	F082111	N/A	MEEPLNSPVVSNGQTPDFGSSFIDAFKAIGADNATPAEKPAVTAAPQKTDNTPPKLSKSEMDIERMFSKKTAAEPAAAAAPAAPDDADIPETIKSTKAADAFRKIKEEKAQLAKQLDELKAGKSTNPQFESQLKTLQEERDALSERVRLLDIERHPDFIKKYEGKITGVFDSVKNLVGTDGERLVSLLKSPDSDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERSSELTEAKADYDAVISKYKQDNEEGTKAALESANKTWQKVSTDARSLEIFEPRENDEEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELTKYRGSEPSVTSKATSGGYRPANANAAKSEDFVASVMKSLGR
Ga0209492_100002765	F012040	N/A	LTKNPSKQAKQDLLNLPEVNLSDWQNEGQQAELAAIMRNPILRMAIRIVSESIPVPMPSHGSKESDIIFAAGVTAGYAHCLENLRKLGVIETAKEPEATFEKQY
Ga0209492_100002774	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKDYDLCVTITADNDQITADQTNVTADGWSEDCYGPQSLTGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNNAQSLTTSADLENPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTSLRRASDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEMLNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLDVLQIVKTENAYGDQCFCIARGSDDSIQIWEVTKADKFDNNIPDGKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDSLEGDVSFNVTYRPDQYPGWIEWTDFSECATTTQCFDLCPIQNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVAMNIIGYCRIKSLRVHAYDIQEPSVGDCRTVFPACTPISACDINPLTYTSESVNP
Ga0209492_100002776	F005740	GAG	MKLIVQDIRSTIARAIGVCVDDARVYEYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIEAIADCCGVGTVRNQWFEFQETGYGLLNGNQVCAGKQLVDRGTVVSYRDMSGGTNSYLRVYRGDDSDIGKKITLQGIDANGNWIRTQDGSGKWIDGEELIIAAPYTQSTKKFTTLTGVIREATNTASRLYEYDATTLLELDLAVYDPDETLPQYRRSYLADRCNNEEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0209492_10000279	F057903	N/A	MMLGIAVDQDISTTLQTMKYRNSAKSSVEVELLSDDVEIRIGETKWAGVAYMREGKSKVYVRTKAEFKAKFVLVDAKP