Scaffold Ga0209617

Basic Information
Taxon OID	3300027720 Open in IMG/M
Scaffold ID	Ga0209617_10033556 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027720 Open in IMG/M

Scaffold ID

Ga0209617_10033556 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2211
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2211

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F006697	Metagenome / Metatranscriptome	366	Y
F043770	Metagenome	155	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_100335561	F043770	N/A	MDLQKRIDQLREQGFNNFALQDRPGPKPTKANCGRFYPLNKEKRGWANNGDEVSRDLVAYVNKFPGLYTLHYSRALLTSGTESFEIDTRPVDEQTPQTFNLADMDERNKDEKRSDELYIREILSKNG
Ga0209617_100335562	F051646	N/A	MSWQIPTQVELDIIAGKAKYQTFQTGNGGQSILQVPANSYAVIFGYDFSPAGGGFIRQQRVGTATGAPLVLLESNIRFFETQQISFYTGTDFFPFIHHINSKSSVAVASTENNVVPNTNFVVNNNIVTEIDSTPISRQVYITSPNDVTITHGLILNASPATTGAIPVTSRTPGFLTYGGSGQLIQAQTNYGPGGTPLQFMQPSPKDFQDFGLGLLPGNPDNQAFATPDATNGLLEANVHLLSLGATFPAAAATNYYLCLHYALYSKTIPETRG
Ga0209617_100335563	F000710	N/A	MNISYRQGIRNKGFQLTVPTTGATQTLSLSGLAKAFEGIILSSTTSAAPATLVNAVQLRVTLTINNDVVIDDVVAHELGASTGTGISTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI
Ga0209617_100335564	F006697	N/A	VAYVDSKLGVSLPGQQTTRVIYDSVNAAAGQQFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIIMNSATSNLADHLNLNITVGNQVIVKDFDPSFNCSSRGLSFDRLHSGFNSTTNLELRLLTDIVIPPQVNFKAELTLGNALVAVNDDITIVLKGYGRIFSAGNSF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209617_10033556

Overview

Ecosystem & Geography

Associated Families

Sequences