Basic Information | |
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Taxon OID | 3300027720 Open in IMG/M |
Scaffold ID | Ga0209617_10032035 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2270 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007911 | Metagenome / Metatranscriptome | 342 | N |
F015449 | Metagenome / Metatranscriptome | 254 | Y |
F057981 | Metagenome | 135 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209617_100320353 | F007911 | AGGAG | MPAVTMLDRLIEAAFQELLTTTVTGVTYHLSHDKTENLSPSIVIKATLGTEEPVQGSGVFSVPVEVIVEDSYDDTTLDEHTRKCSKVLQAFYDSSPLATRLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTYKLAVIAQPNSIAS |
Ga0209617_100320355 | F015449 | GAG | MVDSFWGTTNIKVAAAVAAFGAKLRESDPVTCIVEEGGHRKFTFWFNTGGDQDAKAEMERTWADMKSEPEAAIRYVRAALENRETLLSLMKRAEPILSIKRGSQTLLISERASPELKRAMIKKL |
Ga0209617_100320356 | F057981 | N/A | MSEEALLQELDNSLISPDRYFKDQKLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKRAIRLAWDKDAFREKLMDWIAEMSEEDRNTASLMCSS |
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