Scaffold Ga0209617_10022216

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10022216
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2775
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008741	Metagenome	328	Y
F086724	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_100222161	F086724	N/A	MASIEREVENALLNVVSGIGGVNFFTSERGSPRTLPSVTVQAQIGSEELVPFSGVFKTPASITYV
Ga0209617_100222163	F008741	GGAG	MLPACKWLSEQGNWVYFDCLPQYHSVFDLVSYVRACGSGGDDVIDVEVWPRRYEEYRKSKKKWADFVYSHPDIKGADKENIVLDKLDNKPADGLPENYNLVAPFGLSQGFYINPLDLITRARKEMGKDNFYVLCPPDIRIQGLNTYTAPSVEQMAKAIRGATDFWSINSTPIVLASATRRGKTTGFFPQKGEWETDNIFAFEGMVCLD