Scaffold Ga0209617_10015138

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10015138
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3426
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F058800	Metagenome	134	Y
F069828	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_100151386	F069828	GGAGG	MKRAVVTMAFGPEWEKILELTHPRIDDFAKRNKMDFLVMNKSVIDPKDYNKSMIAHIMVGKNYDQVIYIDCDCLVAKDCDDFANPSEDGNDGFIAFDEGDFLDRKEGMKKLAKEFGGNITPTYYFNFGVFAMTRKHLGLLALPPLGVVPNHFGMQTWANIQAHFWDIPLSGMDPAYNCMTSVEQHYGLDRHKDAMIIHYAGQSGDMVKLSNQIKADDAKLVELGR
Ga0209617_100151387	F058800	AGG	MRLALSWIFYYLGDIVSRTILRHGYGYGLYKTLMLWSVDLDDKFNVWKEVKPKRRRKK
Ga0209617_100151389	F002009	GGA	MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLLKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL