Scaffold Ga0209617

Basic Information
Taxon OID	3300027720 Open in IMG/M
Scaffold ID	Ga0209617_10008527 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027720 Open in IMG/M

Scaffold ID

Ga0209617_10008527 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4674
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4674

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F010159	Metagenome / Metatranscriptome	307	Y
F019128	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_1000852710	F019128	N/A	AAILTNVVGDNLGGFKPYTGLLGAVATSLFLKQPEIAAGMAGYSGAKVAASFLGADSAVGKLLAENAYDVDPSMYLRGYETPGMGAADIYASNYTLNGYEVPGL
Ga0209617_100085276	F010159	N/A	MSWQIPTQIEQDIISGKAVYKTFQTGSGGQSILPVGPNSYVVIFGYDFSPAGGGYVVSQPLSASPFIYSNIIRWFETQQVSFYTGTDFFPFIHHVNTQNAQIWADTFSIVQSSIDNSPIARQVYITSTNDITITVGLILTDPVATQNAIPVTNRTPQGLTYGGSGQVINTQTDFGPALAPQQFMQPSPKDYADFGFGLLPANADGQAFATPDIARGLYDPSAYLATLGNDFRDAAACNYFLCLHYAIYTQTIPEQRG
Ga0209617_100085278	F002287	N/A	MAQVSKLNYVDGKLGAPTSGQQTTRILFNTIEAPGTTSSLTFFRNFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQLTTGGILSDAVGGLAQQTVSIIVGNQTVVKNLPFQFNQGLNGQAFDRLHENGGTVNQQLNSTSTIQNSMPAEIRLLTDIVIPPQVAFEVRIDSNNAVYGTGAVVCALAGYGKIFSAGNSF
Ga0209617_100085279	F004838	N/A	MISAQDKILHVANKLGLTSLKDMQASTGAVYDVDTELSGTIFSQAARHAQPTITNINENQFEVNEALLVESLAFYVRNASGNTLNFQQVYGSGAVIVFDLVIGNKRVMKDTPVFAAGSPYTFANVSQQTATVGESGLQSFAPRHQVFMEGAGILIPPQVQWYVSYTIYNVVTGAIVAPTDEAAIGCYLFGTKVLLNFNTSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209617_10008527

Overview

Ecosystem & Geography

Associated Families

Sequences