Scaffold Ga0209617_10005708

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10005708
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5740
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026210	Metagenome / Metatranscriptome	198	Y
F032572	Metagenome / Metatranscriptome	179	N
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_100057081	F032572	N/A	MEISNTYQYIENYISKPTYFCYVIDRVVNTNPYLFTGEYNKKLINKKVWVAKQVYPMCMPEQYTYFKTF
Ga0209617_1000570813	F071966	AGGAG	MSLLGIYFDIKGYVFKPFYLILGALYFTLLLSLLGTLYIILYIRNTLEKVLKQIEKKYYQ
Ga0209617_1000570815	F026210	AGGAG	MTQWINANPLNYDAKYPQVAESTNDDAKIFVMERNEGKEVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEAIHFVQEIGVKI
Ga0209617_1000570819	F066486	N/A	MKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMRDFFLGLGRRVITEDEFINIGFNYALIKGLGEAKKVKSKRK