Scaffold Ga0209617_10004568

Overview

Basic Information

• Taxon OID: 3300027720
• Scaffold ID: Ga0209617_10004568
• Source Dataset Name: Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6437
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Lake Erie, Canada
• Coordinates
  • Lat. (^o): 41.77
  • Long. (^o): -81.73
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F003660	Metagenome / Metatranscriptome	474	Y
F010395	Metagenome / Metatranscriptome	304	N
F027126	Metagenome / Metatranscriptome	195	N
F060863	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209617_100045681	F060863	N/A	NQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYAFFVFYSNSWQPFMQRANTDLADAAEVAFINCLEVRMYNLLNA
Ga0209617_1000456810	F003660	N/A	MNNQTKAKLKAALATGYIMLTACLGIAFFGRFLFALITN
Ga0209617_1000456813	F001981	N/A	MTYPTLITIPKADICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEAAKHGKTFQAFGAEITLKEGSLTPNYDEDPIYADIKVQLKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFR
Ga0209617_100045683	F027126	N/A	MATFRKYEFAVYADFRTINDSEAAPRTVVELGHINPANPKAWCVDILWEGNEPKNWAKYQTWPEPVGIHTFAGWDEQYAADYNEHKSL
Ga0209617_100045688	F010395	N/A	MHEYHSLRPAKALTNALERLMIAVDNADLEGNHALLLEYRKSCELLGYDPAMAQWAGTKEVSIASQQNLADEVQVSYFHALNPEE